View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_10 (Length: 412)
Name: NF17605_low_10
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 329; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 403
Target Start/End: Complemental strand, 55714508 - 55714125
Alignment:
| Q |
15 |
aagaacaataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttggtta |
114 |
Q |
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||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
55714508 |
aagaacaataggagattattacacatggtgcagcaaccaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttggtta |
55714409 |
T |
|
| Q |
115 |
caacttacaaagtttcagtaatgtggtgggtgaagtgaagtatatctatatcataaaggagctagctttgaataataaattccccgcatgtgtatgttca |
214 |
Q |
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|||||||||||||||||||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |
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| T |
55714408 |
caacttacaaagtttcagtaatgtagtgggtgaagt-----atatctatatcataaaggagttagctttgaataataaattccccgcgtgtgtatgttca |
55714314 |
T |
|
| Q |
215 |
ctcaatagaagaagacaattctcatcatatcatataggtatagatatgtagatataaacatcatgccaccctcttgtgacattatgttatatatactata |
314 |
Q |
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| T |
55714313 |
ctcaatagaagaagacaattctcatcatatcatataggtatagatatgtagatataaacattatgccaccctcttgtgacattatgttatatatactata |
55714214 |
T |
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| Q |
315 |
agctcttctaattaaactagaaaggccttgtgacacgaccacatgtcctaccacaaagaggagtattctatgcgactggatattcatct |
403 |
Q |
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| T |
55714213 |
agctattctaattaaactagaaaggccttgtgacacgaccacgtgccctaccacaaagaggagcattctatgcgactggatattcatct |
55714125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 263 - 404
Target Start/End: Complemental strand, 55297554 - 55297409
Alignment:
| Q |
263 |
tagatataaacatcatgccaccctcttgtgacattatgttatatata----ctataagctcttctaattaaactagaaaggccttgtgacacgaccacat |
358 |
Q |
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| T |
55297554 |
tagatataaacattatgccaccctctcgtgacatcatgttatatatatatactataaactatcctaattaaactagaaaggccttgtgacacgaccactt |
55297455 |
T |
|
| Q |
359 |
gtcctaccacaaagaggagtattctatgcgactggatattcatctc |
404 |
Q |
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| T |
55297454 |
gccctgccacaaagaagagcattctttgggactggatattcatctc |
55297409 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 22 - 116
Target Start/End: Original strand, 5666370 - 5666464
Alignment:
| Q |
22 |
ataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttggttaca |
116 |
Q |
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| T |
5666370 |
ataggagagtattacacatggtgcaataaccaagcaagtggtgatagaatctattctaagatagataggtttattgctagcactacttggttaca |
5666464 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 64 - 111
Target Start/End: Complemental strand, 3940729 - 3940682
Alignment:
| Q |
64 |
gatagaatctattctaagatggatagatttcttgctaacactagttgg |
111 |
Q |
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| T |
3940729 |
gatagaatatattctaagatagatagatttattgctaatactagttgg |
3940682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 2e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 18 - 117
Target Start/End: Complemental strand, 1163300 - 1163200
Alignment:
| Q |
18 |
aacaataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactag-ttggttaca |
116 |
Q |
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||||||||| ||||||||||||||||||| |||||||||||| ||| ||| ||||||||||||||| |||||||||||||| |||||||| ||||||||| |
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| T |
1163300 |
aacaataggggattattacacatggtgcaataatcaagcaagaaattataaaatctattctaagatagatagatttcttgccaacactagtttggttaca |
1163201 |
T |
|
| Q |
117 |
a |
117 |
Q |
| |
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| |
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| T |
1163200 |
a |
1163200 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 40950943 - 40951044
Alignment:
| Q |
15 |
aagaacaataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttggtta |
114 |
Q |
| |
|
|||||| ||||| ||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||| ||||| |||||||||||||||| ||||||| |
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| T |
40950943 |
aagaactataggtgattattacacttggtgcaataaccaagcaagcaatgacggaatctattctaagatagataggtttcttgctaacactaattggtta |
40951042 |
T |
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| Q |
115 |
ca |
116 |
Q |
| |
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|| |
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| T |
40951043 |
ca |
40951044 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 1e-26; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 15 - 117
Target Start/End: Original strand, 25767947 - 25768053
Alignment:
| Q |
15 |
aagaacaataggagattattacacatg----gtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttg |
110 |
Q |
| |
|
||||||||||||||||||||||||||| ||||| ||| |||| ||| |||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
25767947 |
aagaacaataggagattattacacatgcatggtgcaataaccaagtcagccatgatagaatctattctaagatagatatatttcttgctaacactagttg |
25768046 |
T |
|
| Q |
111 |
gttacaa |
117 |
Q |
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||||||| |
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| T |
25768047 |
gttacaa |
25768053 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 21 - 111
Target Start/End: Complemental strand, 27186916 - 27186826
Alignment:
| Q |
21 |
aataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttgg |
111 |
Q |
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||||||||||||||||| |||||| | ||| |||||||| ||||| ||| ||||||||||| ||||| ||| |||||||||||| |||| |
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| T |
27186916 |
aataggagattattacaaatggtgtaataaccaagcaagtggtgatataatatattctaagatagataggtttattgctaacactacttgg |
27186826 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 111
Target Start/End: Complemental strand, 35169045 - 35168950
Alignment:
| Q |
16 |
agaacaataggagattattacacatggtgcagtaatcaagcaagcaatgatagaatctattctaagatggatagatttcttgctaacactagttgg |
111 |
Q |
| |
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|||||||| |||||| |||| |||||||| | ||| ||||| || ||||||||||||| |||||| || |||||| ||||||||||||||||| |
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| T |
35169045 |
agaacaatcggagatcattatacatggtgtaataaccaagctagtggagatagaatctattataagatagacagatttattgctaacactagttgg |
35168950 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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