View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_11 (Length: 403)
Name: NF17605_low_11
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 170; Significance: 4e-91; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 170; E-Value: 4e-91
Query Start/End: Original strand, 192 - 400
Target Start/End: Original strand, 27845219 - 27845427
Alignment:
| Q |
192 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtagggaataagttagtacctgttatatttgtacataagtctaccaagagggac |
291 |
Q |
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| T |
27845219 |
gtaggaaatagggaggttaaatgcttatgagagctatatagctagggtcgggaataagttagtacctgttatatttgtacatatgtctaccaagagggac |
27845318 |
T |
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| Q |
292 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgnnnnnnnnnggaatcaagggatatagctttattt |
391 |
Q |
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| T |
27845319 |
aaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttgtttttttttggaatcaagggatatagctttattt |
27845418 |
T |
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| Q |
392 |
tatcctttg |
400 |
Q |
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| T |
27845419 |
taacctttg |
27845427 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 27845040 - 27845134
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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| T |
27845040 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaa-aagaacaaatatattagtgtctttcgttgatgtacggtaggatcaatgatgatatgg |
27845134 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 73; Significance: 3e-33; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 119
Target Start/End: Original strand, 20140056 - 20140149
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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| T |
20140056 |
ggttttatgaatatgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
20140149 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 24 - 119
Target Start/End: Complemental strand, 22192813 - 22192720
Alignment:
| Q |
24 |
ggttttatgaaaatgtgtttaaaatttcaatgtagtaacaagaacaaatatattagtgtctgttgttgatgtacggtaggatcaatgatgatatgg |
119 |
Q |
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| T |
22192813 |
ggttttatgaatatgtgtttaaaatttcaatgtagtaac--gaacaaatattttagtgtatgttgttgatgtacggtaggatcaatgatgatatgg |
22192720 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 357
Target Start/End: Original strand, 20140192 - 20140259
Alignment:
| Q |
290 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg |
357 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
20140192 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttg |
20140259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 290 - 357
Target Start/End: Complemental strand, 22192677 - 22192610
Alignment:
| Q |
290 |
acaaaagagacagttacttatacacacttttgttttgcagacaaaataagcatcaaaacttttgcttg |
357 |
Q |
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|||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
22192677 |
acaaaagagacagttacttacacacagttttgttttgcagacaaaataagcatcaaaacttttgcttg |
22192610 |
T |
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