View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_12 (Length: 402)
Name: NF17605_low_12
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 343; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Complemental strand, 1581272 - 1580901
Alignment:
| Q |
1 |
attctataacatttcctggcttctccttacacggtccatattcatttatcgcccaaggacattctttctcgcaatcgtcgtcatctcgtttttgatcata |
100 |
Q |
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| T |
1581272 |
attctataacatttcctggcttctccttacacggtccatattcatttatcgcccaaggacattctttctcgcaatcgtcgtcatctcgtttttgatcata |
1581173 |
T |
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| Q |
101 |
aacgacaaaatatttaaatccatgaa--------acactacaaaagtataatttatttggtagaagaaaggtagtcttaaaactgaagctgtaaacttcc |
192 |
Q |
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| T |
1581172 |
aacgacaaaatatttaaatccatgaatccatgaaacactacaaaagtataatttatttggtagaagaaaggtagtcttaaaactgaagctgtaaacttcc |
1581073 |
T |
|
| Q |
193 |
ttatattttagtgttttattcccaaaatcgtcatgattatctttacaatgaacatcaacttgaagagagttggtgaagttgttggtaatactcacatgta |
292 |
Q |
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| T |
1581072 |
ttatattttagtgttttattcccaaaatcgtcatgattatctttacaatgaacatcaacttgaagagagttggtgaagttgttggtaatactcacatgta |
1580973 |
T |
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| Q |
293 |
ctgtggtaggaaaaggcttaaagctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattg |
364 |
Q |
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| T |
1580972 |
ctgtggtaggaaaaggcttaaagctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattg |
1580901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 314 - 379
Target Start/End: Complemental strand, 29308678 - 29308613
Alignment:
| Q |
314 |
agctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattgaaacccataacacaa |
379 |
Q |
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| T |
29308678 |
agctttcagcatctttgaactggaaagcaagaaaaattgttagtaacatagaaactaataacacaa |
29308613 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 329 - 367
Target Start/End: Complemental strand, 20906814 - 20906776
Alignment:
| Q |
329 |
tgaactgcaaaacaacaaaaattgttagtaacattgaaa |
367 |
Q |
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| T |
20906814 |
tgaactgcaaaacaacaaaaataattagtaacattgaaa |
20906776 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 316 - 384
Target Start/End: Complemental strand, 34182085 - 34182017
Alignment:
| Q |
316 |
ctttcaacatccttgaactgcaaaacaacaaaaattgttagtaacattgaaacccataacacaattttg |
384 |
Q |
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| T |
34182085 |
ctttcaccatcctgaaactgcaaagcaacaaaaattgttagcaacatggaaattgaaaacacaattttg |
34182017 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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