View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17605_low_14 (Length: 389)

Name: NF17605_low_14
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17605_low_14
NF17605_low_14
[»] chr8 (2 HSPs)
chr8 (159-373)||(6640696-6640914)
chr8 (13-89)||(6640985-6641061)
[»] chr2 (4 HSPs)
chr2 (186-330)||(8730257-8730402)
chr2 (186-329)||(9818113-9818257)
chr2 (186-304)||(4940932-4941049)
chr2 (186-304)||(5026014-5026131)
[»] chr6 (5 HSPs)
chr6 (187-329)||(19493728-19493870)
chr6 (186-304)||(12926572-12926689)
chr6 (186-304)||(14444123-14444240)
chr6 (28-89)||(19538360-19538421)
chr6 (187-307)||(19538486-19538606)
[»] scaffold0014 (1 HSPs)
scaffold0014 (186-304)||(25306-25423)
[»] chr5 (1 HSPs)
chr5 (186-304)||(25799572-25799689)
[»] chr7 (1 HSPs)
chr7 (186-302)||(1835605-1835720)
[»] chr3 (4 HSPs)
chr3 (186-302)||(23066415-23066530)
chr3 (186-304)||(14906703-14906820)
chr3 (190-302)||(430109-430220)
chr3 (186-301)||(25686234-25686347)
[»] chr1 (1 HSPs)
chr1 (186-302)||(46834332-46834447)
[»] chr4 (3 HSPs)
chr4 (186-302)||(13653945-13654060)
chr4 (186-302)||(13662070-13662185)
chr4 (186-285)||(10344013-10344110)


Alignment Details
Target: chr8 (Bit Score: 190; Significance: 1e-103; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 159 - 373
Target Start/End: Complemental strand, 6640914 - 6640696
Alignment:
Q  159 ggttgcgctcagaagtatcacactacatttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaat 258  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6640914 ggttgcgctcagaagtatcacactacttttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaat 6640815  T
Q  259 ctaagtctcaaaaccatataataaatatc----aagtaggtggacacagaggtgtatcctgacatgaaggatgagatggatcttaacagaggtagatgtg 354  Q
    ||||||||||||||||||||||||||||     ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6640814 ctaagtctcaaaaccatataataaatatatattaagtaggtggacatagaggtgtatcctgacatgaaggatgagatggatcttaacagaggtagatgtg 6640715  T
Q  355 actgacattgtgaaaaaga 373  Q
    |||||||||||||||||||    
T  6640714 actgacattgtgaaaaaga 6640696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 13 - 89
Target Start/End: Complemental strand, 6641061 - 6640985
Alignment:
Q  13 aaaatcaggtgtagaaaattttccaattttttctcaaaatacatttgtaatattaaacaagatgaatcacaagtatc 89  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6641061 aaaatcaggtgtagaaaattttccaattttttctcaaaatacatttgtaatattaaacaagatgaatcacaagtatc 6640985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 186 - 330
Target Start/End: Original strand, 8730257 - 8730402
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||||||||||||||| |||| || |||||||||||||||| |||| || | ||||||  |||||||||||     
T  8730257 tttgcatcaaaatatattgaaattattactaatatagtattataacattgtacttgaaactaaaagttataatcaaattatcaaaataatataataaata 8730356  T
Q  285 atcaagtaggtggacacagaggtgtatcctgacatgaaggatgaga 330  Q
    |||||||||||||||||  ||||| ||||| || ||||||||||||    
T  8730357 atcaagtaggtggacacgaaggtggatcctaacttgaaggatgaga 8730402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 186 - 329
Target Start/End: Original strand, 9818113 - 9818257
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| ||| |||| || ||||||||||||||||| |||| || |||||||||||| ||| |||| |  ||||||||  |||||||||||     
T  9818113 tttgcatcaaaatatattaaaattatcactaatatagtattataacattataattgaaactaaaaattataatcaatttctcaaaataatataataaata 9818212  T
Q  285 atcaagtaggtggacacagaggtgtatcctgacatgaaggatgag 329  Q
    ||||||||||||||||| |||||| ||||| || |||||||||||    
T  9818213 atcaagtaggtggacacggaggtggatcctaacttgaaggatgag 9818257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 4941049 - 4940932
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||  || | ||||||  |||| |||||||    
T  4941049 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataattaaattttcaaaataatatgataaata 4940952  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  4940951 atcaagtaggtggacacaga 4940932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 5026131 - 5026014
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||  || | ||||||  |||| |||||||    
T  5026131 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataattaaattttcaaaataatatgataaata 5026034  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  5026033 atcaagtaggtggacacaga 5026014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 187 - 329
Target Start/End: Original strand, 19493728 - 19493870
Alignment:
Q  187 ttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat-a 285  Q
    ||||||||||||| |||||||| || ||||| ||||||||||| |||| || |||||||||||||||| | || || ||||||||  |||| |||||| |    
T  19493728 ttgcatcaaaatatattgaaattattactaa-atagtattataacattgtacttgaaactaaaagttatagtcaaattctcaaaataatatgataaataa 19493826  T
Q  286 tcaagtaggtggacacagaggtgtatcctgacatgaaggatgag 329  Q
    |||||||||||||||  ||| || ||||| ||  ||||||||||    
T  19493827 tcaagtaggtggacatggagttggatcctaactcgaaggatgag 19493870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 12926689 - 12926572
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| ||| ||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| |||||||    
T  12926689 tttgcatcaaaatatattgaaataattactaa-ataatattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaata 12926592  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  12926591 atcaagtaggtggacacaga 12926572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 14444240 - 14444123
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || |||||||||| || |||| || | ||||||  |||| |||||||    
T  14444240 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagctataatcaaattttcaaaataatatgataaata 14444143  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  14444142 atcaagtaggtggacacaga 14444123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 28 - 89
Target Start/End: Original strand, 19538360 - 19538421
Alignment:
Q  28 aaattttccaattttttctcaaaatacatttgtaatattaaacaagatgaatcacaagtatc 89  Q
    |||||| ||||||  |||||||||||| |||||||||||| |||||||||| ||||| ||||    
T  19538360 aaatttcccaattcattctcaaaatacttttgtaatattagacaagatgaaccacaaatatc 19538421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 187 - 307
Target Start/End: Original strand, 19538486 - 19538606
Alignment:
Q  187 ttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat-a 285  Q
    ||||||||||||| || ||||| || ||||| ||||||||||| |||| || |||||| ||||||||| | || || ||| ||||  |||| |||||| |    
T  19538486 ttgcatcaaaatatatagaaattattactaa-atagtattataacattgtacttgaaagtaaaagttatagtcaaattctgaaaataatatgataaataa 19538584  T
Q  286 tcaagtaggtggacacagaggt 307  Q
    ||||||||||||| || |||||    
T  19538585 tcaagtaggtggatacggaggt 19538606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0014 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0014
Description:

Target: scaffold0014; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 25423 - 25306
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| |||||||    
T  25423 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaata 25326  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  25325 atcaagtaggtggacacaga 25306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 25799689 - 25799572
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| ||| |||| |||||||| ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| |||||||    
T  25799689 tttgcatcaaaatatattaaaataataactaa-atagtattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaata 25799592  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  25799591 atcaagtaggtggacacaga 25799572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 1835720 - 1835605
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| ||||||     
T  1835720 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaata 1835623  T
Q  285 atcaagtaggtggacaca 302  Q
    ||||||||||||||||||    
T  1835622 atcaagtaggtggacaca 1835605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 302
Target Start/End: Complemental strand, 23066530 - 23066415
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| ||||||     
T  23066530 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaata 23066433  T
Q  285 atcaagtaggtggacaca 302  Q
    ||||||||||||||||||    
T  23066432 atcaagtaggtggacaca 23066415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 186 - 304
Target Start/End: Complemental strand, 14906820 - 14906703
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||| | ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| |||||||    
T  14906820 tttgcatcaaaatatattgaaataattactta-atagtattagaacatt-tacttcaaactaaaagttataatcaaattttcaaaataatatgataaata 14906723  T
Q  286 -tcaagtaggtggacacaga 304  Q
     |||||||||||||||||||    
T  14906722 atcaagtaggtggacacaga 14906703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 190 - 302
Target Start/End: Complemental strand, 430220 - 430109
Alignment:
Q  190 catcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata-tca 288  Q
    |||||||||| |||||||| || ||||| ||||||||| | |||| || || ||||||||||||| |||| || | ||||||  |||| ||||||| |||    
T  430220 catcaaaatatattgaaataattactaa-atagtattagaacatt-tactttaaactaaaagttataatcaaattttcaaaataatatgataaataatca 430123  T
Q  289 agtaggtggacaca 302  Q
    ||||||||||||||    
T  430122 agtaggtggacaca 430109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 186 - 301
Target Start/End: Original strand, 25686234 - 25686347
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| ||| |||| || ||||  ||||||||||| |||| || |||||| ||||||||| | || || ||||||||  |||  ||||||     
T  25686234 tttgcatcaaaatatattaaaataattacta--atagtattataacatt-tacttgaaagtaaaagttatattcaaattctcaaaataataggataaata 25686330  T
Q  285 atcaagtaggtggacac 301  Q
    |||||||||||||||||    
T  25686331 atcaagtaggtggacac 25686347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 46834332 - 46834447
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||| || |||||||| |||| || |||||||||||||||| |||| || ||| ||||  |||| ||||||     
T  46834332 tttgcatcaaaatatattgaaataattactaa-attgtattataacatt-tacttgaaactaaaagttataatcaaattctgaaaataatatgataaatg 46834429  T
Q  285 atcaagtaggtggacaca 302  Q
    |||||||||||| |||||    
T  46834430 atcaagtaggtgaacaca 46834447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 13653945 - 13654060
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| |  || ||||||||||||| |||| || | ||||||  |||| ||||||     
T  13653945 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tcctttaaactaaaagttataatcaaattttcaaaataatatgataaata 13654042  T
Q  285 atcaagtaggtggacaca 302  Q
    ||||||||||||||||||    
T  13654043 atcaagtaggtggacaca 13654060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 186 - 302
Target Start/End: Original strand, 13662070 - 13662185
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaat- 284  Q
    |||||||||||||| |||||||| || ||||| ||||||||| | |||| |  || ||||||||||||| |||| || | ||||||  |||| ||||||     
T  13662070 tttgcatcaaaatatattgaaataattactaa-atagtattagaacatt-tcctttaaactaaaagttataatcaaattttcaaaataatatgataaata 13662167  T
Q  285 atcaagtaggtggacaca 302  Q
    ||||||||||||||||||    
T  13662168 atcaagtaggtggacaca 13662185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 285
Target Start/End: Complemental strand, 10344110 - 10344013
Alignment:
Q  186 tttgcatcaaaatacattgaaatcataactaatatagtattatagcattctatttgaaactaaaagttacaatctaagtctcaaaaccatataataaata 285  Q
    |||||||||||||| |||||||| || ||||| |||||||||||  ||| || || ||||||||||||| |||| || ||||||||  |||| |||||||    
T  10344110 tttgcatcaaaatatattgaaataattactaa-atagtattataaaatt-tactttaaactaaaagttataatcaaattctcaaaataatatgataaata 10344013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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