View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_15 (Length: 384)
Name: NF17605_low_15
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_15 |
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Alignment Details
Target: chr5 (Bit Score: 311; Significance: 1e-175; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 11 - 377
Target Start/End: Original strand, 10445192 - 10445558
Alignment:
| Q |
11 |
cataggacggtggataagaaagttaatgaatatttgtatgccacggatccttctccctacaacttgtaaggcatcctagtgtatagtttcctcgaataaa |
110 |
Q |
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| T |
10445192 |
cataggacattggataagcaagttaatgaatatttgaatgctttggatccttctccctacaacttgtaaggcatcttagtgtatagtttcctagaataaa |
10445291 |
T |
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| Q |
111 |
ttctataatctaattttaatttgtgttaccccatatgtgcatgtattttgcgatcttggtctgcttgattaatttttattgttgaaaaagatgaaccaat |
210 |
Q |
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| T |
10445292 |
ttctataatctaattttaatttgtgttaccccatttgtgcatgtattttgcgatcttgttctgcttgattaatttttattgttgaaaaagatgaaccaat |
10445391 |
T |
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| Q |
211 |
tgctgagcctattgtaactagaatcaatatagctgagcctgcgtaagttcctcctttgactaaatagcattcaccattcaaccaacctgccccatagggt |
310 |
Q |
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| T |
10445392 |
tgctgagcctattgtaactagaatcaatatggctgagcctgcgtaagttcctcctttgactaaatagcattcaccattcaaccaacctgccccatagggc |
10445491 |
T |
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| Q |
311 |
tgccttttgctcatgcttgttgcaacaattagtaaaataactgtaattccaaagctaagcctgccaa |
377 |
Q |
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| T |
10445492 |
tgccttttgctcatgcttgttgcaacaattagtaaaataactgtaactccaaagctaagcctgccaa |
10445558 |
T |
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Back To:
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Target: chr8 (Bit Score: 70; Significance: 2e-31; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 184 - 373
Target Start/End: Complemental strand, 30499294 - 30499105
Alignment:
| Q |
184 |
ttttattgttgaaaaagatgaaccaattgctgagcctattgtaactagaatcaatatagctgagcctgcgtaagttcctcctttgactaaatagcattca |
283 |
Q |
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| T |
30499294 |
ttttaatgttgaaaaagctgaaccatttagagaaccaattgtaacaaggatcaatatggctgagccagagtaagttcctcctttgactagaaagcactca |
30499195 |
T |
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| Q |
284 |
ccattcaaccaacctgccccatagggttgccttttgctcatgcttgttgcaacaattagtaaaataactgtaattccaaagctaagcctg |
373 |
Q |
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| T |
30499194 |
ccattcaaccatcctttcccatagagctgccttctgctcatgcttgttgcagcaatcaacaatataactacaactccaaagctaagcctg |
30499105 |
T |
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