View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_17 (Length: 337)
Name: NF17605_low_17
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_17 |
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Alignment Details
Target: chr6 (Bit Score: 176; Significance: 9e-95; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 176; E-Value: 9e-95
Query Start/End: Original strand, 97 - 320
Target Start/End: Complemental strand, 7003675 - 7003461
Alignment:
| Q |
97 |
gtgtttgagtcttttatcacgcagatgaaccatataacaattcactacttttctttacaatctttacaaataatgtattttggatggttacttcatgata |
196 |
Q |
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| T |
7003675 |
gtgtttgaatcttttatcacgcagatagaccatataacaattcactgcttttctttacaa---------ataatgtattttggatggttacttcatgata |
7003585 |
T |
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| Q |
197 |
tgatgttagagctgattagatggcatattgtttaatcctttgttgccctcttttgataaaaatgttaaattttagcataaggtagaaaagataatccttg |
296 |
Q |
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| T |
7003584 |
tgatgttagagctgattagatggcatattgtttaatcctttgttgccctcttttgataaaaatgttaaattttagcataaggtagaaaagataatccttg |
7003485 |
T |
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| Q |
297 |
tccacacatagtgtgagagaacat |
320 |
Q |
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|||||||||||||||||||||||| |
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| T |
7003484 |
tccacacatagtgtgagagaacat |
7003461 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 101
Target Start/End: Complemental strand, 7003930 - 7003830
Alignment:
| Q |
1 |
tctcttgtccattctccttaaaaattgagtaatttattacttttataattgagatttgacatcatttttattttcaacaagtacaaaaacatgcttgtgt |
100 |
Q |
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|||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |
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| T |
7003930 |
tctcttgtccatcctccttaaaaaatgagtaatttattacttttataattgagatttgacatcaattttattttcaacgagtacaaaaacatgcttgtgt |
7003831 |
T |
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| Q |
101 |
t |
101 |
Q |
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| T |
7003830 |
t |
7003830 |
T |
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