View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_18 (Length: 329)
Name: NF17605_low_18
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-138; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-138
Query Start/End: Original strand, 1 - 293
Target Start/End: Complemental strand, 11103864 - 11103573
Alignment:
| Q |
1 |
tacactgtattgccgtactctgccgctgtttttgctactgttttaaaaccgatgtgcaaataagttgtaaaagaccaaacaagaagagcaatgaacatga |
100 |
Q |
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| T |
11103864 |
tacactgtattgccgtactctgccgctgtttttgctactgttttaaaaccgatgtgcaaataagttgtaaaagaccaaacaagaagtgcaatgaacatga |
11103765 |
T |
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| Q |
101 |
gcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgccact |
200 |
Q |
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| T |
11103764 |
gcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgact |
11103665 |
T |
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| Q |
201 |
gattgtacnnnnnnnttacatatattaattagatgcaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggt |
293 |
Q |
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| T |
11103664 |
gattgtgcaaaaaaa-tacatatattaattagatggaaattaagtatatattaaaatcatacaatagcacaaataggataactagattaaggt |
11103573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 37 - 316
Target Start/End: Complemental strand, 11590266 - 11589998
Alignment:
| Q |
37 |
actgttttaaaaccgatgtgcaaataagttgtaaaagaccaaacaagaagagcaatgaacatgagcaagaatgctatttctgtgatagaaacaattccaa |
136 |
Q |
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| T |
11590266 |
actgttttaaaaccgatgtgcaaataagttgtaaaagaccaaacaagaagtacaatgaacatgagcaaaaatgctatctctgtgatagaaacaattccaa |
11590167 |
T |
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| Q |
137 |
gaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgccactgattgtacnnnnnnnttacatatattaattagatgc |
236 |
Q |
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| T |
11590166 |
gaggtccttttacaagcattggacggttccatatggttgtcccatgtttcttcccattgcgactgattgtacaaaaaaattacatatattaattagattc |
11590067 |
T |
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| Q |
237 |
aaattaagtatatattaaaatcatacaatagcacaaata-ggataactagattaaggtacgtaacaaaatattacatttct |
316 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||||||||||||||| |
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| T |
11590066 |
---------atatattaaaatcatacaatagcacaaatagggataactagattaaggt---taaaaaaatattacatttct |
11589998 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 11115646 - 11115513
Alignment:
| Q |
73 |
gaccaaacaagaagagcaatgaacatgagcaagaatgctatttctgtgatagaaacaattccaagaggtccttttacaagcattggacggttccatatgg |
172 |
Q |
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| T |
11115646 |
gaccaaattagaagtgcaatgaacataagcaagaatgctatttctgtaatagaaacaattccaagaggtcctttcacaagcattggacgattccatatgg |
11115547 |
T |
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| Q |
173 |
ttgtcccatgtttcttcccattgccactgattgt |
206 |
Q |
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| T |
11115546 |
ttgtcccatgtttcttcccattgccactgattgt |
11115513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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