View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17605_low_25 (Length: 273)
Name: NF17605_low_25
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_25 |
 | |
|
| [»] chr4 (2 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 265; Significance: 1e-148; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 1 - 273
Target Start/End: Original strand, 47810359 - 47810631
Alignment:
| Q |
1 |
cactcaacttattcaagttctggaagcacttaaacaagcttctcaaaacatccaaaatcaccataatcacttctcagattccaattcatcttccataaaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47810359 |
cactcaacttattcaagttctggaagcacttaaacaagcttctcaaaacatccaaaatcaccataatcacttctcagattccaattcatcttccataaaa |
47810458 |
T |
|
| Q |
101 |
gcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctcaaatccctagtcagctcgctccaaagctcaaaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
47810459 |
gcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctcaaatccctagtcaactcgctccaaagctcaaaac |
47810558 |
T |
|
| Q |
201 |
cgagtctcaaatcgttcataactcgtcccatctcatctcactccatcaccaaaacctccgccgcaatcgaatc |
273 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
47810559 |
cgagtctcaaatcgttcataactcgtcccctctcatctcactccatcaccaaaacctccgccgcaatcgaatc |
47810631 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 68 - 273
Target Start/End: Complemental strand, 3928704 - 3928499
Alignment:
| Q |
68 |
cacttctcagattccaattcatcttccataaaagcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctca |
167 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3928704 |
cacttctcagattccaattcatcttccataaaagcacttttccaactccacacaattcttccaactaattcaaacatctctcaccacctcacccacctca |
3928605 |
T |
|
| Q |
168 |
aatccctagtcagctcgctccaaagctcaaaaccgagtctcaaatcgttcataactcgtcccatctcatctcactccatcaccaaaacctccgccgcaat |
267 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3928604 |
aatccctagtcaactcgctccaaagctcaaaaccgagtctcaaatcgttcataactcgtcccatctcatctcactccatcaccaaaacctccgccgcaat |
3928505 |
T |
|
| Q |
268 |
cgaatc |
273 |
Q |
| |
|
|||||| |
|
|
| T |
3928504 |
cgaatc |
3928499 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University