View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17605_low_33 (Length: 243)
Name: NF17605_low_33
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_33 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 3951677 - 3951902
Alignment:
| Q |
1 |
tctttataacattagtctttaattcaatccttcacttactaaaacattgctagttaagtcctaatccaatcatcctcggaaataccaaatannnnnnngt |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
3951677 |
tctttataacattagtctttaattcaatccttcacttactaaaacattgctagttaagtcctaatccaatcatcctcggaaataccaaatatttttttgt |
3951776 |
T |
|
| Q |
101 |
ttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaattttattgtatatcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3951777 |
ttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaattttattgtatatcct |
3951876 |
T |
|
| Q |
201 |
aatactacaagatttggtacatgaac |
226 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
3951877 |
aatactacaagatttggtacatgaac |
3951902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 222
Target Start/End: Complemental strand, 4004207 - 4004083
Alignment:
| Q |
99 |
gtttcttgttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaattttattgtatatc |
198 |
Q |
| |
|
|||||| ||||| ||| |||||| ||| ||| ||| |||||||| |||||||||||||| ||||| ||||||||||||||||||||| | |||| |||| |
|
|
| T |
4004207 |
gtttctagttgactttagttaattggaatttaattttggaccaa-aaactgatatgtgaatttgttttgcaactttatgtattgaatcctgttgtgtatc |
4004109 |
T |
|
| Q |
199 |
cta--atactacaagatttggtacat |
222 |
Q |
| |
|
||| ||||||||||| ||||||||| |
|
|
| T |
4004108 |
ctaatatactacaagaattggtacat |
4004083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 110 - 186
Target Start/End: Complemental strand, 4012858 - 4012782
Alignment:
| Q |
110 |
aatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttatgtattgaatt |
186 |
Q |
| |
|
|||||||||||| ||||| ||| ||||||||||||||||||||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4012858 |
aatttggttaatttgagttgaattttggaccaagaaactgatatgtgaatttgtattgcaactttatgcattgaatt |
4012782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 4027115 - 4027047
Alignment:
| Q |
108 |
tgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttat |
176 |
Q |
| |
|
|||||||||||||| ||||||| ||| ||||||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
4027115 |
tgaatttggttaattggagtttaattttggaccaagaaactgatatatgaatttgtattgcaactttat |
4027047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 3804029 - 3803996
Alignment:
| Q |
193 |
tatatcctaatactacaagatttggtacatgaac |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
3804029 |
tatatcctaatactacaagaattggtacatgaac |
3803996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 3822163 - 3822130
Alignment:
| Q |
193 |
tatatcctaatactacaagatttggtacatgaac |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
3822163 |
tatatcctaatactacaagaattggtacatgaac |
3822130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 193 - 226
Target Start/End: Complemental strand, 4223228 - 4223195
Alignment:
| Q |
193 |
tatatcctaatactacaagatttggtacatgaac |
226 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||| |
|
|
| T |
4223228 |
tatatcctaatactacaagaattggtacatgaac |
4223195 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 142 - 178
Target Start/End: Complemental strand, 3803966 - 3803930
Alignment:
| Q |
142 |
agaaactgatatgtgactttgtattgcaactttatgt |
178 |
Q |
| |
|
|||| ||||||||||| |||||||||||||||||||| |
|
|
| T |
3803966 |
agaagctgatatgtgaatttgtattgcaactttatgt |
3803930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 107 - 176
Target Start/End: Complemental strand, 13399993 - 13399924
Alignment:
| Q |
107 |
ttgaatttggttaatcggagtttcattctggaccaagaaactgatatgtgactttgtattgcaactttat |
176 |
Q |
| |
|
|||||||| |||||| ||||||| || ||||||||||||||||||| ||| ||||||||| |||||||| |
|
|
| T |
13399993 |
ttgaattttgttaattggagtttagttttggaccaagaaactgatatttgaatttgtattgaaactttat |
13399924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University