View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17605_low_35 (Length: 240)

Name: NF17605_low_35
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17605_low_35
NF17605_low_35
[»] chr7 (5 HSPs)
chr7 (1-178)||(23110023-23110200)
chr7 (1-178)||(31076676-31076853)
chr7 (1-178)||(47195091-47195268)
chr7 (7-178)||(19916015-19916186)
chr7 (1-129)||(44083324-44083452)
[»] chr4 (2 HSPs)
chr4 (1-178)||(1807618-1807795)
chr4 (1-178)||(49349174-49349351)
[»] chr1 (3 HSPs)
chr1 (1-178)||(27525530-27525707)
chr1 (2-178)||(24136031-24136208)
chr1 (12-175)||(45951446-45951600)
[»] chr2 (3 HSPs)
chr2 (8-178)||(6756761-6756931)
chr2 (1-178)||(21812712-21812889)
chr2 (1-157)||(7126187-7126343)
[»] chr6 (2 HSPs)
chr6 (1-178)||(34551283-34551460)
chr6 (53-175)||(26881164-26881288)
[»] chr8 (3 HSPs)
chr8 (1-175)||(41012082-41012254)
chr8 (1-166)||(5372842-5373007)
chr8 (104-178)||(9532057-9532131)


Alignment Details
Target: chr7 (Bit Score: 162; Significance: 1e-86; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 23110200 - 23110023
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  23110200 caaaagctaactagaaatcgaaagcatcaaagttgagcaacgagatcagctcatcaggaggtgtcactcaagttgttatttcaagagtagagttcctccc 23110101  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23110100 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctaggagatgatccaa 23110023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 31076853 - 31076676
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  31076853 caaaagctaactagaaatcgaaagcatcaaagttgagcaacgagagcagctcatcaggaggtgtcacccaagttgttactccaagagtagagttcctccc 31076754  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||    
T  31076753 caacctatccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacatggaagatgatccaa 31076676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 47195268 - 47195091
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||| |||||||||| |||||||||||||||||||| ||| ||||||||||||||||||||| |||||| | |||||||||||||||||||    
T  47195268 caaaagctaactaaaaatcgaaagtatcaaagttgagcaacgagagcagctcatcaggaggtgtcacccaaattgttactccaagagtagagttcctccc 47195169  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47195168 caatctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 47195091  T

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Target: chr7; HSP #4
Raw Score: 124; E-Value: 7e-64
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 19916186 - 19916015
Alignment:
Q  7 ctaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccccaacct 106  Q
    ||||||||||||||||||||||||||||||||||||||| |||  ||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||    
T  19916186 ctaactagaaatcgaaagcatcaaagttgagcaacgagagcagcccatcaagaggtgtcacccaagttgttactccaagagtagagttccttcccaacct 19916087  T
Q  107 agccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||| || ||||||||||||||||||  |||||||||||||||||||||||||| ||||||||||||    
T  19916086 agccaaaaaatccgcacatacattgccttcatagagcacatgtttgaacaccaaacctgagagatgatccaa 19916015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 44083324 - 44083452
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||||| | |||||||||||||||||||    
T  44083324 caaaagctaactagaaatcgaaagcatcaaagttgagcaatgagagcagctcatcaggaggtgtcacccaagttgttactccaagagtagagttcctccc 44083423  T
Q  101 caacctagccaaaaagtctgcacatacat 129  Q
     ||||||||||||||||||||||||||||    
T  44083424 taacctagccaaaaagtctgcacatacat 44083452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 1807618 - 1807795
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||| ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  1807618 caaaagctaactagaaatcgaaaacatcaaagttgagcaacgaaatcagctcatcaggaggtgtcacccaagttgttattccaagagtagagttcctccc 1807717  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1807718 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 1807795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 49349351 - 49349174
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||| ||||||||||||| ||||| ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||    
T  49349351 caaaagctaactagaaatcgaaaacatcaaagttgagtaacgaaatcagctcatcaggaggtgtcacccaagttgttattccaagagtagagttcctccc 49349252  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49349251 caacctagccaaaaaatctacacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 49349174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 158; Significance: 3e-84; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 27525707 - 27525530
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||||||    
T  27525707 caaaagctaactagaaatcgaaagcatcaaagttgagcaacgagatcagctcatcaggaggtgtcatccaagttgttattccaagagtagagttcctccc 27525608  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  27525607 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacttgggagatgatccaa 27525530  T

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Target: chr1; HSP #2
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 2 - 178
Target Start/End: Original strand, 24136031 - 24136208
Alignment:
Q  2 aaaaactaactagaaatcgaaagcatcaaagttgagcaacga-gatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||||||| || ||||||||||||||||||||||| ||||| || ||   ||||||||||||||||||||| ||||| | |||||||||||||||| ||    
T  24136031 aaaaactaattaaaaatcgaaagcatcaaagttgagtaacgaagagcaacccatcaggaggtgtcacccaagctgttactccaagagtagagttccttcc 24136130  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||| ||||||||    
T  24136131 caacctagccaaaaaatctgcacatacattgccttcacggagcacatgtttgaacaccaaacttaggaggtgatccaa 24136208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 12 - 175
Target Start/End: Original strand, 45951446 - 45951600
Alignment:
Q  12 tagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccccaacctagcca 111  Q
    |||||||||||||||||||||||||||||||||| |||  ||||||||||||||||||||||||||| | |||||||||||||||| ||||||||| |      
T  45951446 tagaaatcgaaagcatcaaagttgagcaacgagagcagcccatcaggaggtgtcacccaagttgttactccaagagtagagttcct-cccaacctaac-- 45951542  T
Q  112 aaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatc 175  Q
          ||||||||| |||||||||||||||||||| ||||||| |||||||||||||||||||    
T  45951543 ------ctgcacatatattgccttcacggagcacatatttgaacgccaaacctgggagatgatc 45951600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 151; Significance: 5e-80; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 151; E-Value: 5e-80
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 6756931 - 6756761
Alignment:
Q  8 taactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccccaaccta 107  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||| ||||||||||||    
T  6756931 taactagaaatcgaaagcatcatagttgagcaacgagatcagctcatcaggaggtgtcatccaagttgttattccaagagtagagtttctccccaaccta 6756832  T
Q  108 gccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6756831 gccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 6756761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 178
Target Start/End: Complemental strand, 21812889 - 21812712
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| ||| ||||||||||||||| |||||||||||| | |||||||||||||||||||    
T  21812889 caaaagctaactagaaatcgaaagcatcaaagttgagcaatgagagcagctcatcaggaggtgtcgcccaagttgttactccaagagtagagttcctccc 21812790  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||    
T  21812789 caacctagccaaaaagtctgcacatacattgtcttcacggagcacatgtttgaacaccaaacttgggagatgatccaa 21812712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 157
Target Start/End: Complemental strand, 7126343 - 7126187
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||| ||||||||||||||||||||| ||| ||| || |||||  ||||||||||||||||||   ||||||||||||||||| |    
T  7126343 caaaagctaactagaaatcaaaagcatcaaagttgagcaacaagagcagctcttcagggtgtgtcacccaagttgttacaccaagagtagagttcctctc 7126244  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacac 157  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  7126243 caacctagccaaaaagtctgcacatacattgccttcacagagcacatgtttgaacac 7126187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 150; Significance: 2e-79; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 178
Target Start/End: Original strand, 34551283 - 34551460
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||| ||| |||| ||||||||||||||||||||||| | |||||||||||||||||||    
T  34551283 caaaagctaactagaaatcgaaagcatcaaagttgagcaacgagagcagctcattaggaggtgtcacccaagttgttactccaagagtagagttcctccc 34551382  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  34551383 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacatcaaacctgggagatgatccaa 34551460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 53 - 175
Target Start/End: Complemental strand, 26881288 - 26881164
Alignment:
Q  53 atcaggaggt-gtcacccaagttgttatttcaagagtagagttcctccccaacctagccaaaaagtctgcacatacattgcc-ttcacggagcacatgtt 150  Q
    |||||||||| ||||||||||||||||   |||||||||||||||| |||||||||| |||||| ||| ||||||||||||| |||| |||| |||||||    
T  26881288 atcaggaggttgtcacccaagttgttacaccaagagtagagttccttcccaacctagtcaaaaaatctacacatacattgcctttcatggagtacatgtt 26881189  T
Q  151 tgaacaccaaacctgggagatgatc 175  Q
    ||||||||||||||| |||||||||    
T  26881188 tgaacaccaaacctgcgagatgatc 26881164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 116; Significance: 4e-59; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 1 - 175
Target Start/End: Complemental strand, 41012254 - 41012082
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| |||| ||||||||||||||||||||||||||||| |||| ||| |||||||||||||||| |||| |||||| |||||||| ||||||||||||    
T  41012254 caaaagctaagtagaaatcgaaagcatcaaagttgagcaatgagagcagctcatcaggaggtgtcatccaaattgttacttcaagagaagagttcctccc 41012155  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatc 175  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||  ||||||||| ||||||||||||||||||    
T  41012154 caacctagccaaaaagtatgcatatacattgccttcacggagcac--gtttgaacaacaaacctgggagatgatc 41012082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 166
Target Start/End: Original strand, 5372842 - 5373007
Alignment:
Q  1 caaaaactaactagaaatcgaaagcatcaaagttgagcaacgagatcagatcatcaggaggtgtcacccaagttgttatttcaagagtagagttcctccc 100  Q
    ||||| ||||||| ||||| ||||||| ||||||||||||| ||| ||| |||||| ||||| |||||||| |||||| |||||||||| ||||||||||    
T  5372842 caaaagctaactaaaaatcaaaagcattaaagttgagcaacaagagcagctcatcaagaggtatcacccaaattgttacttcaagagtatagttcctccc 5372941  T
Q  101 caacctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgg 166  Q
    |||||||  ||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||    
T  5372942 caacctaatcaaaaagtctgcacatacattaccttcacggagcacatgtttgaacaccaaatctgg 5373007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 104 - 178
Target Start/End: Original strand, 9532057 - 9532131
Alignment:
Q  104 cctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctgggagatgatccaa 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  9532057 cctagccaaaaagtctgcacatacattgccttcacggagcacatgtttgaacaccaaacctggaagatgatccaa 9532131  T

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