View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_4 (Length: 533)
Name: NF17605_low_4
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 337; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 13 - 517
Target Start/End: Complemental strand, 20755574 - 20755089
Alignment:
| Q |
13 |
aatattgctagaaggagaaatatgcaatggtattatgtcaattaatttattagcaattttattcttct--tggtatannnnnnnnnngttggtgattctt |
110 |
Q |
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| T |
20755574 |
aatattgctagaaggagaaatgtgcaatggtattatgtcaattaatttattagcaattttattcttctcttagtatatttttttt--gttggtgattctt |
20755477 |
T |
|
| Q |
111 |
ctcttagtatttcttttcctagttatacatatgtgtatgtcattacttcttttatttttgacaaacttgtgtttaagtagttaggaacaaacttgttttt |
210 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
20755476 |
ctcttagtatttcttttcctagttatacatttgtgtatgtcattacttcttttatttttgacaaacttgtgtttgagtagttaggaacaaacttgttttt |
20755377 |
T |
|
| Q |
211 |
gacaacattcaattatagagatggttaacataagtgaagtgaatctaaaataaaggttcaagaagaaggatctttttctatgattcaatttaatttttcc |
310 |
Q |
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||||| |||||||||||||||||| |||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
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| T |
20755376 |
aacaaccttcaattatagagatggt-aacataagtgaagtgaatctaagataa--------------ggatctttttctatgattcaatttaatttttcc |
20755292 |
T |
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| Q |
311 |
aatcaatttttcaagatctaaccctaaaaggagattcgaaaagccccttgataaaggttcacatggttcaaccaaccaagaaccctaggagagatattct |
410 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||| |
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| T |
20755291 |
aaacaatttttcaagatctaaccctaaaaggagattcgaaaagccccttgataaaggttcacatggttcaaccaaccaagaaccctaggagggatgttct |
20755192 |
T |
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| Q |
411 |
ctacctcacacacaagtctcaaacttgtaaattctattatatatcatcagaaactcctaattagaaacaaaccctaggagggattgtaccattatcagga |
510 |
Q |
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|||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
20755191 |
ctacctcacaaacaagtctcaaacttgtaaattctat----tatcatcagaaactcctaattagaaacaaaccctaggagggattgtaccattatcacga |
20755096 |
T |
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