View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_41 (Length: 214)
Name: NF17605_low_41
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_41 |
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Alignment Details
Target: chr8 (Bit Score: 88; Significance: 2e-42; HSPs: 10)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 88 - 195
Target Start/End: Original strand, 12890626 - 12890728
Alignment:
| Q |
88 |
tgtgaagagcagccaatggatgggacaaagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatatagcattgagcatcttt |
187 |
Q |
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| T |
12890626 |
tgtgaagagcagccaatggatgggacaaagtgggtagcagcggctagggttcctatccaaaccctaact-----atatatatatagcattgagcatcttt |
12890720 |
T |
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| Q |
188 |
tagctttg |
195 |
Q |
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|||||||| |
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| T |
12890721 |
tagctttg |
12890728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 88 - 188
Target Start/End: Original strand, 14638506 - 14638605
Alignment:
| Q |
88 |
tgtgaagagcagccaatggatgggacaaagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatatagcattgagcatcttt |
187 |
Q |
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| T |
14638506 |
tgtgaagagcggccagtggatgg-acaaagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatatagcattgagcaacttt |
14638604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 115 - 188
Target Start/End: Original strand, 14631939 - 14632012
Alignment:
| Q |
115 |
aagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatatagcattgagcatctttt |
188 |
Q |
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| T |
14631939 |
aagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatatagcattgagcaactttt |
14632012 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 17 - 91
Target Start/End: Original strand, 12890522 - 12890596
Alignment:
| Q |
17 |
cacagaagtaataaaaggatttggcagaaattgtaataaatagatgcaatcagatccggtgcacatacctgtgtg |
91 |
Q |
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| T |
12890522 |
cacagaaataataaaaggatttgacagaaattgtaatgaataaatgcaatcagatccggtgcacatacctgtgtg |
12890596 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 89 - 172
Target Start/End: Original strand, 14646897 - 14646976
Alignment:
| Q |
89 |
gtgaagagcagccaatggatgggacaaagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatatata |
172 |
Q |
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| T |
14646897 |
gtgaagagcagccagtggaaagaacaa-gtgggtagcagcggctagggttc---tgcaaaccctatctatctaatatatatata |
14646976 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14631782 - 14631852
Alignment:
| Q |
21 |
gaagtaataaaaggatttggcagaaattgtaataaatagatgcaatcagatccggtgcacatacctgtgtg |
91 |
Q |
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| T |
14631782 |
gaagtaataaaatggtttggcagaaatgacaatgaatagatgcaatcagatccaattcacatacctgtgtg |
14631852 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 21 - 91
Target Start/End: Original strand, 14638374 - 14638444
Alignment:
| Q |
21 |
gaagtaataaaaggatttggcagaaattgtaataaatagatgcaatcagatccggtgcacatacctgtgtg |
91 |
Q |
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| T |
14638374 |
gaagtaataaaatggtttggcagaaatgacaatgaatagatgcaatcagatccaattcacatacctgtgtg |
14638444 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 112 - 170
Target Start/End: Complemental strand, 14664496 - 14664438
Alignment:
| Q |
112 |
acaaagtgggtagcagcggctagggttcctatccaaaccctaactatctaatatatata |
170 |
Q |
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| T |
14664496 |
acaaactgggtagctgcagctagggttcctttccaagccctatctatctaatatatata |
14664438 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 118 - 170
Target Start/End: Original strand, 14665583 - 14665635
Alignment:
| Q |
118 |
tgggtagcagcggctagggttcctatccaaaccctaactatctaatatatata |
170 |
Q |
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|||||||| ||||||||||||||| ||||| ||||| ||||||| |||||||| |
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| T |
14665583 |
tgggtagctgcggctagggttcctttccaagccctatctatctagtatatata |
14665635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 112 - 153
Target Start/End: Original strand, 12072610 - 12072651
Alignment:
| Q |
112 |
acaaagtgggtagcagcggctagggttcctatccaaacccta |
153 |
Q |
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| T |
12072610 |
acaaagtgggtagaagcggctagggttcctttccacacccta |
12072651 |
T |
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