View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17605_low_42 (Length: 206)

Name: NF17605_low_42
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17605_low_42
NF17605_low_42
[»] chr3 (1 HSPs)
chr3 (83-190)||(25519003-25519123)
[»] chr5 (6 HSPs)
chr5 (83-190)||(29567826-29567946)
chr5 (83-190)||(29168727-29168849)
chr5 (126-188)||(27919227-27919289)
chr5 (83-190)||(29425828-29425948)
chr5 (83-128)||(1758660-1758705)
chr5 (83-128)||(27919171-27919216)
[»] chr4 (4 HSPs)
chr4 (83-190)||(18986599-18986719)
chr4 (83-190)||(27482652-27482772)
chr4 (83-190)||(27520798-27520917)
chr4 (90-190)||(27462585-27462698)


Alignment Details
Target: chr3 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 25519003 - 25519123
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat-------------gtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||||||||||||| |||||||||||||||||||||||||||||||             |||||||||||||||||||||||||||||||||||||||||    
T  25519003 aagagcactctcttaactcttttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgattgtcttttctattgtaatc 25519102  T
Q  170 ttcaatgtatttggttcttta 190  Q
    || ||||||||||||||||||    
T  25519103 ttgaatgtatttggttcttta 25519123  T

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Target: chr5 (Bit Score: 61; Significance: 2e-26; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 29567946 - 29567826
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat-------------gtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||||||||||| ||||||| |||||||||||||||||||||||||             ||||||||||||||||||||| |||||||||||||||||||    
T  29567946 aagagcactctcctgactctcttgttgctgaagatgaaaaagtcatatctcaggtatatgtcttgaatcttggactgtgactgtcttttctattgtaatc 29567847  T
Q  170 ttcaatgtatttggttcttta 190  Q
    ||||||| |||||||||||||    
T  29567846 ttcaatgaatttggttcttta 29567826  T

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Target: chr5; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 29168727 - 29168849
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat-------------gtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||||||||||||||||||| ||||||||||||||||||| |||||             |||||||||||| ||||||||||||||||||||||||||||    
T  29168727 aagagcactctcttgactctcttgttgctgaagatgaaaatgtcatatctcaggtatatgtcttgaatcttcgactgtgattgtcttttctattgtaatc 29168826  T
Q  170 ttcaatgta--tttggttcttta 190  Q
    |||||||||  ||||||||||||    
T  29168827 ttcaatgtacttttggttcttta 29168849  T

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Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 27919227 - 27919289
Alignment:
Q  126 catgtcttgaatcttggactgtgattgtcttttctattgtaatcttcaatgtatttggttctt 188  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||    
T  27919227 catgtcttgaatcttcgactgtgattgacttttctattgtaatcttcaatgtatttggttctt 27919289  T

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Target: chr5; HSP #4
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 29425828 - 29425948
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat-------------gtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||             ||||||||| ||   ||||||||||||||||||||||||||    
T  29425828 aagaacactctcttgactcttttgttgctgatgatgaaaaagtcatatctcaggtacatgtcttgaatattcagctgtgattgtcttttctattgtaatc 29425927  T
Q  170 ttcaatgtatttggttcttta 190  Q
    |||||| ||||||||||||||    
T  29425928 ttcaatctatttggttcttta 29425948  T

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Target: chr5; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 1758660 - 1758705
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat 128  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  1758660 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat 1758705  T

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Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 83 - 128
Target Start/End: Original strand, 27919171 - 27919216
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat 128  Q
    |||| |||||||||||||||||| || |||||||||||||||||||    
T  27919171 aagaacactctcttgactcttttattactgaagatgaaaaagtcat 27919216  T

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Target: chr4 (Bit Score: 57; Significance: 5e-24; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 18986599 - 18986719
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcat-------------gtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    ||||||||| ||||||||||||||||||| ||||||||||||||||             ||||||||||||  |||||||||||||||||||||||||||    
T  18986599 aagagcactgtcttgactcttttgttgctaaagatgaaaaagtcatatctcaggtacatgtcttgaatcttcaactgtgattgtcttttctattgtaatc 18986698  T
Q  170 ttcaatgtatttggttcttta 190  Q
    |||| ||||||||||||||||    
T  18986699 ttcagtgtatttggttcttta 18986719  T

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Target: chr4; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 27482652 - 27482772
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagt-------------catgtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||             ||| |||||||||||  || |||||||| |||||||||||||||    
T  27482652 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcatatctcaggtacatatcttgaatctttaacggtgattgtgttttctattgtaatc 27482751  T
Q  170 ttcaatgtatttggttcttta 190  Q
    |||||||||||||||||||||    
T  27482752 ttcaatgtatttggttcttta 27482772  T

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Target: chr4; HSP #3
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 83 - 190
Target Start/End: Complemental strand, 27520917 - 27520798
Alignment:
Q  83 aagagcactctcttgactcttttgttgctgaagatgaaaaagt-------------catgtcttgaatcttggactgtgattgtcttttctattgtaatc 169  Q
    |||||||||||||||||||||||||||||||||||||||||||             |||||||||||||||  ||||||||||||||||||| |||||||    
T  27520917 aagagcactctcttgactcttttgttgctgaagatgaaaaagtcatatcgcaggtacatgtcttgaatcttcaactgtgattgtcttttcta-tgtaatc 27520819  T
Q  170 ttcaatgtatttggttcttta 190  Q
    ||||||||| |||||||||||    
T  27520818 ttcaatgtagttggttcttta 27520798  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 90 - 190
Target Start/End: Original strand, 27462585 - 27462698
Alignment:
Q  90 ctctcttgactcttttgttgctgaagatgaaaaagtcatgtct-------------tgaatcttggactgtgattgtcttttctattgtaatcttcaatg 176  Q
    ||||||||||||||||||| ||||||||||||||||||| |||             ||||| ||  ||||||||||  ||||||||||||||||||||||    
T  27462585 ctctcttgactcttttgtttctgaagatgaaaaagtcatatctcaggtacatatcttgaatattcaactgtgattgagttttctattgtaatcttcaatg 27462684  T
Q  177 tatttggttcttta 190  Q
    ||||||||||||||    
T  27462685 tatttggttcttta 27462698  T

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