View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_6 (Length: 454)
Name: NF17605_low_6
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 110; Significance: 3e-55; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 110; E-Value: 3e-55
Query Start/End: Original strand, 314 - 435
Target Start/End: Original strand, 4841062 - 4841183
Alignment:
| Q |
314 |
cattttaatattaaaagttaatttaacttgtatgcagttttcttattaataagctagcatcttggaaagacagactttgcattacttggtaaattggtgt |
413 |
Q |
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| T |
4841062 |
cattttaatattaaaagttaatttcacttgtatgcagttttgtcattaataagctagcatcttggaaagacagactttgcattacttggtaaattggtgt |
4841161 |
T |
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| Q |
414 |
gggatttacttatgcctactaa |
435 |
Q |
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| T |
4841162 |
gggatttacttatgcctactaa |
4841183 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 185 - 283
Target Start/End: Original strand, 4838843 - 4838942
Alignment:
| Q |
185 |
tcattttttagagtgatgaagacattttaatattgtgtatttattttctaaatatagaaagcttt-agattttgaagaagtctaaactaacttttattac |
283 |
Q |
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| T |
4838843 |
tcattttttaaagtgatgaagacattttaatattgtgtagttattttctaaatatagaaagctttgagattttaaagaagtctaaactaactgttattac |
4838942 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 18 - 99
Target Start/End: Original strand, 4832198 - 4832279
Alignment:
| Q |
18 |
ataaagttatatattgtcccacatcggacatttgaaaagtttagagaggtgaactaccattataaataaaggtctagctatc |
99 |
Q |
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| T |
4832198 |
ataaagttatatattgtcccacatcggacatttgaaaagtttaaagaggtgaactaccattataaataaaggtgtagctatc |
4832279 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 18 - 154
Target Start/End: Original strand, 4838689 - 4838825
Alignment:
| Q |
18 |
ataaagttatatattgtcccacatcgg-acatttgaaaagtttagagaggtgaactaccattataaataaaggtctagctatctcattctttcttg-taa |
115 |
Q |
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| T |
4838689 |
ataaagttatatattggcccacatcgggacgtttgaaaagtt--gagacgtgaacttccattataaataaaggtatagctatcccattcattcatgcaaa |
4838786 |
T |
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| Q |
116 |
gaaaattttacttggtattacaatgatctacatcatttt |
154 |
Q |
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| T |
4838787 |
gaaaattttactcggtattaaaatggtctgcatcgtttt |
4838825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 390 - 444
Target Start/End: Original strand, 4839295 - 4839349
Alignment:
| Q |
390 |
ttgcattacttggtaaattggtgtgggatttacttatgcctactaaccacctatg |
444 |
Q |
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| T |
4839295 |
ttgcattacttggtaaattggtgtggaatttacttatgcctactaaccacctatg |
4839349 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 188 - 276
Target Start/End: Original strand, 4832352 - 4832442
Alignment:
| Q |
188 |
ttttttagagtgatgaagacattttaatattgtgtatttattttct-aaatatagaaagcttt-agattttgaagaagtctaaactaactt |
276 |
Q |
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| T |
4832352 |
ttttttaaagcgatgaagatattctaatattgtgtagttattctcttaaatatagaaagctttgagattttgaataagtctaaactaactt |
4832442 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 309 - 381
Target Start/End: Original strand, 4838968 - 4839044
Alignment:
| Q |
309 |
ctaaccattttaatattaa----aagttaatttaacttgtatgcagttttcttattaataagctagcatcttggaaa |
381 |
Q |
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| T |
4838968 |
ctaaccattttaatattatttttaagttaatttcacttgtatgcggttttctcattaataagctagcatcttggaaa |
4839044 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 88
Target Start/End: Original strand, 4798621 - 4798678
Alignment:
| Q |
31 |
ttgtcccacatcggacatttgaaaagtttagagaggtgaactaccattataaataaag |
88 |
Q |
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| T |
4798621 |
ttgtcccacatcggaagtttgagaaacttagagatgtaaactaccattataaataaag |
4798678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 35 - 87
Target Start/End: Original strand, 4803544 - 4803596
Alignment:
| Q |
35 |
cccacatcggacatttgaaaagtttagagaggtgaactaccattataaataaa |
87 |
Q |
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| T |
4803544 |
cccacatgggacgtttgagaagcttagagatgtaaactaccattataaataaa |
4803596 |
T |
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