View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_7 (Length: 450)
Name: NF17605_low_7
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_7 |
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| [»] scaffold0692 (1 HSPs) |
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Alignment Details
Target: scaffold0692 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: scaffold0692
Description:
Target: scaffold0692; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 7217 - 6798
Alignment:
| Q |
12 |
cgaagaatatacatagttggaatcattaccagacagaccaatatgtcaatatcacttaagcaacatcagctacaaatatgctgcccgaatcacaccatcc |
111 |
Q |
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| T |
7217 |
cgaaaaatatacatagttggaatcattaccggacagaccaatatgtcaatatcacttaagcaacatcagctacaaatatgctgcccgaatcacaccatcc |
7118 |
T |
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| Q |
112 |
acctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtatagga |
211 |
Q |
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| T |
7117 |
acctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttaagccaacaaatgttaaaaataagtatagaa |
7018 |
T |
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| Q |
212 |
aaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacagcaaatgtgagtggcagtgttgtgcctaagtttaacattat |
311 |
Q |
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| T |
7017 |
aaagctccaaaagaagaaaatagaattctgccaaggttatttatgtacctggtaaaa-aacaaatgtgagtggcagtgttgtgcctaagtttgacattat |
6919 |
T |
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| Q |
312 |
ttaacactaacgaaagaaccacgatccttgaagaattccaaatttcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtgtttgggg |
411 |
Q |
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| T |
6918 |
ttaacactaatgaaagaaccacgatcctcgaagaattccaaatttcaatagtttaactaaagaatgtacaattaagaaaaccactatctagtatttgggg |
6819 |
T |
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| Q |
412 |
agcaaagatttacaaatcatg |
432 |
Q |
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| T |
6818 |
agcaaagatttacaaatcatg |
6798 |
T |
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Target: chr6 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 12 - 432
Target Start/End: Complemental strand, 12892919 - 12892495
Alignment:
| Q |
12 |
cgaagaatatacatagttggaatcattaccagacagaccaatatgtc----aatatcacttaagcaacatcagctacaaatatgctgcccgaatcacacc |
107 |
Q |
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|||| ||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
12892919 |
cgaaaaatatacatagttggaatcattaccggacagaccaatatgtctgtcaatatcacttaagcaacatcaactacaaatatgctgcccgaatcacacc |
12892820 |
T |
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| Q |
108 |
atccacctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtat |
207 |
Q |
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| T |
12892819 |
atccacctaaaacatctttgttggagcactgcaaagtagaatacagtaatattaaacagaagtacacaagtttgagccaacaaatgttaaaaataagtat |
12892720 |
T |
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| Q |
208 |
aggaaaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacagcaaatgtgagtggcagtgttgtgcctaagtttaaca |
307 |
Q |
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| T |
12892719 |
agaaaaagctccaaaaatagaaaatagaattctgccaaggttatttatgtgcctggtaaaacaacaaatgtgagtggcagtgttgtgcctaagtttgaca |
12892620 |
T |
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| Q |
308 |
ttatttaacactaacgaaagaaccacgatccttgaagaattccaaatttcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtgttt |
407 |
Q |
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|||||||||||||| ||||||||||||||||| |||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
12892619 |
ttatttaacactaatgaaagaaccacgatcctcaaagaattcaaaatatcaatagtttaactaaagaatgtacgattaagaaaaccactatctagtattt |
12892520 |
T |
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| Q |
408 |
ggggagcaaagatttacaaatcatg |
432 |
Q |
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| T |
12892519 |
ggggagcaaagatttacaaatcatg |
12892495 |
T |
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