View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17605_low_8 (Length: 419)
Name: NF17605_low_8
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 375; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 7 - 401
Target Start/End: Original strand, 47059527 - 47059921
Alignment:
| Q |
7 |
tcgaagaaaataaggacaatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggccta |
106 |
Q |
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| T |
47059527 |
tcgaacaaaagaaggacaatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggccta |
47059626 |
T |
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| Q |
107 |
tcgtttgcttgatttgaggcataatccagagattgccacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggataga |
206 |
Q |
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| T |
47059627 |
tcttttgcttgatttgaggcataattcagagattgccacatgtttcatcgaacggtgtgaacttgatgaaaatcagaatattcagttaattaaggataga |
47059726 |
T |
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| Q |
207 |
gcgaggatgtttgctgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttcttga |
306 |
Q |
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| T |
47059727 |
gcgaggatgtttgctgatttgttgtataaattgattgaaaaagggcattcaagtgttaggaatacaattatggaagaagaatcctacgacaagttcttga |
47059826 |
T |
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| Q |
307 |
attgcaataaacaagtatagatatgtcttctcttagcactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaa |
401 |
Q |
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| T |
47059827 |
attgcaataaacaagtatagatatgtcttctcttagcactgagaatccaatggcatttcaagatctaaggatagcatgggcgcttaaattttgaa |
47059921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 23 - 130
Target Start/End: Original strand, 11726195 - 11726302
Alignment:
| Q |
23 |
caatgctgaaatatttaatgtggattactatactttgatggggttgccacatgggtgtgatcaatctgaattggagagggcctatcgtttgcttgatttg |
122 |
Q |
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| T |
11726195 |
caatgctgaaatgtttaacgtggattaccatgttttgattgggtttccacatgggtgtgttcgatcagaattggagaggacgtactatttgcttgatttg |
11726294 |
T |
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| Q |
123 |
aggcataa |
130 |
Q |
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| T |
11726295 |
aggcataa |
11726302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 13 - 100
Target Start/End: Complemental strand, 11726885 - 11726797
Alignment:
| Q |
13 |
aaaataaggacaatgctgaaatatttaatgtggatt-actatactttgatggggttgccacatgggtgtgatcaatctgaattggagag |
100 |
Q |
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| T |
11726885 |
aaaagaagaacaatgctgaaatgtttaatgtggatttactatgctttgatggggtttccatatgaatgtgatcgatcagaattggagag |
11726797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 221 - 286
Target Start/End: Complemental strand, 11726671 - 11726607
Alignment:
| Q |
221 |
tgatttgttgtataaattgattgagaaagggcattcaagtgttaggaatacaattatggaagaaga |
286 |
Q |
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| T |
11726671 |
tgattttttgtagaaattgcttgagaaagggtattcatgtgttatgaatac-attatggaagaaga |
11726607 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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