View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17605_low_9 (Length: 416)
Name: NF17605_low_9
Description: NF17605
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17605_low_9 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 17 - 399
Target Start/End: Original strand, 46012786 - 46013170
Alignment:
| Q |
17 |
ctgtgttgtatatagcttcgaatctctataagcgtctaatatagcaacatctggttagatatttgaaaagaacgattcaaaatccaaaagaacttttcca |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46012786 |
ctgtgttgtatatagcttcgaatctctataagcgtctaatatagcaacatctggttagatatttgaaaagaacgattcaaaatccaaaagaacttttcca |
46012885 |
T |
|
| Q |
117 |
gttcacatgaaagtatatcaacccaaatctctccaaaggcatgtgacagtataaacatttatccacccactaagggtgcggttagtagtacaatggaaag |
216 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
46012886 |
gttcacatgaaagtatatcaacccaaatctctccaaaggcatgtgacagtataaacatttatccaccaactaagggtgcggttagtagtacaatggaaag |
46012985 |
T |
|
| Q |
217 |
ggatggtgtaaaaatggacctcaaaccaaaccctcaccctcataattgctttctatccaccggtgatcatataaaaccaaagacat--nnnnnnntggaa |
314 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||| |
|
|
| T |
46012986 |
ggatggtgtaaaaatggacttcaaaccaaaccctcaccctcataattgctttctatccaccggtgaccatataaaaccaaagacataaaaaaaaatggaa |
46013085 |
T |
|
| Q |
315 |
tttggatcccaaaagtttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacattcccgatgtt |
399 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46013086 |
tttggatcccaaaagtttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacattcccgatgtt |
46013170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 198 - 393
Target Start/End: Original strand, 46019242 - 46019444
Alignment:
| Q |
198 |
ttagtagtacaatggaaagggatggtgtaaaaatggacctcaaaccaaaccctcaccctcataattgctttctatccaccggtgatcatataaaaccaaa |
297 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||| ||| |||||| ||||||||||||||||||||| || || |||||||||||||| |
|
|
| T |
46019242 |
ttagtagtacaatggaaagtgatggtgtaaaaatggacctcaaacc-aacactcaccgtcataattgctttctatccactggcgaccatataaaaccaaa |
46019340 |
T |
|
| Q |
298 |
gacat--------nnnnnnntggaatttggatcccaaaagtttatttagcacattatagttcaaataagactcaaattcaacattgcaaaaacattacat |
389 |
Q |
| |
|
||||| |||||||||||||||||| ||||||| || ||||||||| ||||||||||||| ||||||||||| |||||||||||||| |
|
|
| T |
46019341 |
gacataaaagagcttgtgtatggaatttggatcccaaatgtttattaagtacattatagctcaaataagactctaattcaacattacaaaaacattacat |
46019440 |
T |
|
| Q |
390 |
tccc |
393 |
Q |
| |
|
|||| |
|
|
| T |
46019441 |
tccc |
46019444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 130 - 177
Target Start/End: Original strand, 46019197 - 46019244
Alignment:
| Q |
130 |
tatatcaacccaaatctctccaaaggcatgtgacagtataaacattta |
177 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46019197 |
tatatcaacccaaatctctccaaaggcatgtgacagtataaacattta |
46019244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 198 - 234
Target Start/End: Complemental strand, 46247399 - 46247363
Alignment:
| Q |
198 |
ttagtagtacaatggaaagggatggtgtaaaaatgga |
234 |
Q |
| |
|
||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
46247399 |
ttagtagcacaatggaaagtgatggtgtaaaaatgga |
46247363 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University