View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_high_1 (Length: 538)
Name: NF17606_high_1
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_high_1 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 222 - 538
Target Start/End: Complemental strand, 48415604 - 48415281
Alignment:
| Q |
222 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctg-------tacaatg |
314 |
Q |
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| T |
48415604 |
ctcaacatatagttatatagaccgttctttataaaactaacaccatcatataaactcttctgagccacattatatgacatgttctgataactgtacaatg |
48415505 |
T |
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| Q |
315 |
agcccggaataaatgtacaaatctggttagctcgtggttacaagtctcttcgaaaacgtnnnnnnntatctatcttgacattgtatgtgaattaaatccg |
414 |
Q |
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| T |
48415504 |
agcccagaataaatgtacaaatctggttagctcgtggttacaagtctcttcgacaacgtaaaaaaatatctatcttgacattgtatatgaattaaatccg |
48415405 |
T |
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| Q |
415 |
ttcacattacggatgtttgtgttgacatgttcaggaaagcattcaacaacacggtgctatgtgatgcaacagaaaaacaacaacatgaaaaggaaagcaa |
514 |
Q |
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| T |
48415404 |
ctcacattacggatgtttgtgttggcattttcaggaaagcattcaacaacacggtgctatgtgatgcaacagaaaaacaacaacatgaaaaggaaaacaa |
48415305 |
T |
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| Q |
515 |
cgagagatgtttggtttccgacaa |
538 |
Q |
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| T |
48415304 |
cgagagatgtttggtttccgacaa |
48415281 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 133; E-Value: 7e-69
Query Start/End: Original strand, 8 - 148
Target Start/End: Complemental strand, 48415824 - 48415684
Alignment:
| Q |
8 |
cgaagaatatcaacatttttatcaatcacatgaggcacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
107 |
Q |
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| T |
48415824 |
cgaagaatatcaacatttttatcaatcacatgaggtacaccagcataaatttcaaccatcacaacaacaacaaacacattctttgggtgacattattgta |
48415725 |
T |
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| Q |
108 |
aatcgttacatcgaatgcgaaggatccaatgccagagtatc |
148 |
Q |
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| T |
48415724 |
aatcgttacattgaatgcgaaggatccaatgccagagtatc |
48415684 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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