View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_high_3 (Length: 410)
Name: NF17606_high_3
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 378; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 8 - 393
Target Start/End: Complemental strand, 48415188 - 48414803
Alignment:
| Q |
8 |
agaagcaaaggaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaa |
107 |
Q |
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| T |
48415188 |
agaagcaaaagaagagactgaaggaagaaatgagtttgatgagagtgttctttaaaagattgaccaaaactgtggttaatcaccaagaggttcttcagaa |
48415089 |
T |
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| Q |
108 |
taaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgtgaagaaagtgaaatatacgaaagagaagctgtg |
207 |
Q |
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| T |
48415088 |
taaattgttggaggtgattgatagaatggaaaaagaaaggatgcagagggaagaaaattggaggcgggaagaaagtgaaatatacgaaagagaagctgtg |
48414989 |
T |
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| Q |
208 |
atgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagt |
307 |
Q |
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| T |
48414988 |
atgaaagcacgtgagcgtgattttgctaaacggagagaatcttccattgtttccagcattgagaaaataacaggtcgaagattttctagtcagtgacagt |
48414889 |
T |
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| Q |
308 |
aatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttg |
393 |
Q |
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| T |
48414888 |
aatagaatagaagattaatgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatttg |
48414803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 326 - 391
Target Start/End: Complemental strand, 48403722 - 48403658
Alignment:
| Q |
326 |
tgtaaggattatttaaattttattatagatgtagttttagtttgtgttgaaagaaagattgaaatt |
391 |
Q |
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| T |
48403722 |
tgtaagtattatttcaattttatt-taaatgcaatttgagtttgtgttgaaaaaaagattgaaatt |
48403658 |
T |
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