View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17606_low_2 (Length: 496)

Name: NF17606_low_2
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17606_low_2
NF17606_low_2
[»] chr8 (2 HSPs)
chr8 (83-481)||(10669858-10670265)
chr8 (89-159)||(36574922-36574992)
[»] chr6 (3 HSPs)
chr6 (1-166)||(22540098-22540262)
chr6 (13-143)||(22540629-22540759)
chr6 (180-256)||(738007-738082)
[»] chr3 (4 HSPs)
chr3 (57-159)||(7481942-7482044)
chr3 (57-159)||(7463844-7463946)
chr3 (185-259)||(20974930-20975003)
chr3 (207-259)||(20961014-20961066)
[»] chr4 (4 HSPs)
chr4 (185-255)||(10128706-10128775)
chr4 (25-165)||(13231338-13231478)
chr4 (208-253)||(3232568-3232613)
chr4 (198-258)||(13232732-13232792)
[»] chr2 (4 HSPs)
chr2 (25-155)||(14243853-14243983)
chr2 (73-159)||(43236609-43236695)
chr2 (25-159)||(7982153-7982287)
chr2 (27-133)||(34404850-34404956)


Alignment Details
Target: chr8 (Bit Score: 295; Significance: 1e-165; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 83 - 481
Target Start/End: Original strand, 10669858 - 10670265
Alignment:
Q  83 ccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaaaa-----tgattaca- 176  Q
    ||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |     | ||||||     
T  10669858 ccagacagattctgccatgtcataaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaataattagtaattacag 10669957  T
Q  177 -----aatttggaaggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagccataatagtataacatt 271  Q
         | ||| ||||||||| ||| ||||||||||||||||||||||||  |||||||| ||| |||||| |||||||||||||||||||||||||| ||    
T  10669958 gacaaagtttagaaggattaataa-ctacatggaggaaaattcaactgagtcctatttgcagg-actatagacatatttaagccataatagtataacctt 10670055  T
Q  272 catcaacaactttgtgaacctaacatcaaagtaactcatctgtaataaaaggtgaatatgtaatgttaacttgaaagtttagttgagatgtacaatagat 371  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10670056 catcaacaactttgtgaacctaacatcaaagtaactcatctgtaataaaaggtgaatatgtaatgttaacttgaaagtttagttgagatgtacaatagat 10670155  T
Q  372 ttggcacgggactgctcatttatcacaacgacgataatgaaaatacctccaagatgggaagatagaggaatttaagagaagcaaattacataacataatt 471  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  10670156 ttggcacgggactgttcatttatcacaacgacgataatgaaaatacctccaagatgggaagatagaggaatttaagagaagcaatttacataacataatt 10670255  T
Q  472 ccttatttgt 481  Q
    ||||||||||    
T  10670256 ccttatttgt 10670265  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 36574992 - 36574922
Alignment:
Q  89 agattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaa 159  Q
    ||||||||||| ||||||||||  |||||||||||||||||| |  ||||| |||||   |||||||||||    
T  36574992 agattctgccacgtcatcaccacctcactaatcatgtgccacgtcggtaattaaatgtgtttaggaccaaa 36574922  T

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Target: chr6 (Bit Score: 54; Significance: 8e-22; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 1 - 166
Target Start/End: Complemental strand, 22540262 - 22540098
Alignment:
Q  1 tggtcaattcacacttgtctattatcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccat 100  Q
    |||||| ||||||||| | || | ||||||| || ||||||||||||| | | |||||||||||||||||| |||||||||| |||  | ||||| ||||    
T  22540262 tggtcatttcacacttatttaatgtcattaaaggcaaaatggtcatttcaaatgaaatttgttgagtcatccatgtcctttt-cagtcaaattcttccat 22540164  T
Q  101 gtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaagttcaaa 166  Q
     ||||| ||| |||||||||||  ||||||| | |||||||||||  ||||| |||||| ||||||    
T  22540163 ctcatcgccacgtcactaatcaattgccacaaaagtaatcaaatgagattagaaccaaaattcaaa 22540098  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 13 - 143
Target Start/End: Original strand, 22540629 - 22540759
Alignment:
Q  13 acttgtctattatcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatg 112  Q
    ||||||||| | | |||||||| |||||||  |||||| | ||||||||  ||| |||| |||| |||| ||||  ||||| | ||||||||||||||      
T  22540629 acttgtctaatttgattaagggaaaaatggcaattttagatgaaatttgaagagacatccatgttctttcccagtcagatttttccatgtcatcaccaca 22540728  T
Q  113 tcactaatcatgtgccacatatgtaatcaaa 143  Q
    ||| |||||||||| |||||| |||||||||    
T  22540729 tcaataatcatgtggcacataagtaatcaaa 22540759  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 256
Target Start/End: Original strand, 738007 - 738082
Alignment:
Q  180 ttggaaggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagcca 256  Q
    |||||||||||||||| || |||||| |||||||||| ||| |  |||||| |||||| | | ||||||||||||||    
T  738007 ttggaaggattagtaa-cttcatggacgaaaattcaaatgacctatatttgcagggacgaaagacatatttaagcca 738082  T

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Target: chr3 (Bit Score: 51; Significance: 5e-20; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 7482044 - 7481942
Alignment:
Q  57 atttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggacc 156  Q
    ||||||||| ||||||||| ||||| |||  |||||| ||||| ||||||||||| ||||||||||||||||| ||| |||||||||||  |||| ||||    
T  7482044 atttgttgactcatcaatgccctttcccaattagattttgccacgtcatcaccatctcactaatcatgtgccatataagtaatcaaatgagattatgacc 7481945  T
Q  157 aaa 159  Q
    |||    
T  7481944 aaa 7481942  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 57 - 159
Target Start/End: Complemental strand, 7463946 - 7463844
Alignment:
Q  57 atttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggacc 156  Q
    ||||||||| ||||||||| ||||| |||  |||||||||||| ||||||||||| ||| |||||||||| || ||| |||||||||||  |||| ||||    
T  7463946 atttgttgactcatcaatgccctttcccaattagattctgccacgtcatcaccatctcattaatcatgtgtcatataagtaatcaaatgaaattatgacc 7463847  T
Q  157 aaa 159  Q
    |||    
T  7463846 aaa 7463844  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 259
Target Start/End: Complemental strand, 20975003 - 20974930
Alignment:
Q  185 aggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagccataa 259  Q
    |||||||||||  |||||||| |||||||||||||| ||||||||| |||||||||| |||||||||| ||||||    
T  20975003 aggattagtaag-tacatggacgaaaattcaactgagccctatttgcagggactatagacatatttaaaccataa 20974930  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 20961066 - 20961014
Alignment:
Q  207 gaaaattcaactgaaccctatttgaagggactataaacatatttaagccataa 259  Q
    |||||||||||||| ||||||||| |||||||||| ||||||||  |||||||    
T  20961066 gaaaattcaactgagccctatttgcagggactatagacatatttcggccataa 20961014  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 185 - 255
Target Start/End: Complemental strand, 10128775 - 10128706
Alignment:
Q  185 aggattagtaaactacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagcc 255  Q
    |||||||||||  ||||||||| |||||||||  |||||||||||| ||||||||||||||||||||||||    
T  10128775 aggattagtaag-tacatggagtaaaattcaaacgaaccctatttgcagggactataaacatatttaagcc 10128706  T

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Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 25 - 165
Target Start/End: Complemental strand, 13231478 - 13231338
Alignment:
Q  25 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 124  Q
    |||||||||||||| ||||||||| | | |  ||||| | ||||||| ||||||||| ||||  |||||  ||||  ||||| |||  |||||| |||||    
T  13231478 tcattaagggtaaagtggtcatttcagatgtcatttgcttagtcatccatgtcctttcccagtcagattaagccacatcatcgccacatcactagtcatg 13231379  T
Q  125 tgccacatatgtaatcaaatggtattaggaccaaagttcaa 165  Q
    ||||||||| |||||||||||  ||| |||||||| |||||    
T  13231378 tgccacataagtaatcaaatgtgatttggaccaaatttcaa 13231338  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 253
Target Start/End: Original strand, 3232568 - 3232613
Alignment:
Q  208 aaaattcaactgaaccctatttgaagggactataaacatatttaag 253  Q
    |||||||||  || ||||||||| ||||||||||||||||||||||    
T  3232568 aaaattcaaacgagccctatttgcagggactataaacatatttaag 3232613  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 198 - 258
Target Start/End: Original strand, 13232732 - 13232792
Alignment:
Q  198 tacatggaggaaaattcaactgaaccctatttgaagggactataaacatatttaagccata 258  Q
    ||||||||  ||||||||||  |  |||||||| ||||||||||||||||||| |||||||    
T  13232732 tacatggactaaaattcaaccaaggcctatttgcagggactataaacatatttgagccata 13232792  T

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Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 25 - 155
Target Start/End: Original strand, 14243853 - 14243983
Alignment:
Q  25 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 124  Q
    ||||||| || ||||||||||||  ||| | |||||| |||||||||  |||||||| |||   | ||| |||||  ||||| | | |||||||||||||    
T  14243853 tcattaatggaaaaatggtcattccatatgtaatttgctgagtcatccttgtcctttcccaatcaaattatgccacatcatcgctacgtcactaatcatg 14243952  T
Q  125 tgccacatatgtaatcaaatggtattaggac 155  Q
    ||||||||| |||||||||||  ||||||||    
T  14243953 tgccacataagtaatcaaatgagattaggac 14243983  T

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Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 159
Target Start/End: Complemental strand, 43236695 - 43236609
Alignment:
Q  73 atgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtgccacatatgtaatcaaatggtattaggaccaaa 159  Q
    ||||||||| |||  |||||||||||| ||||||||||  |||||||||||||||||| |  ||||| |||||   |||||||||||    
T  43236695 atgtcctttcccaattagattctgccaggtcatcaccacctcactaatcatgtgccacgtcggtaattaaatgtgtttaggaccaaa 43236609  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 25 - 159
Target Start/End: Original strand, 7982153 - 7982287
Alignment:
Q  25 tcattaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatg 124  Q
    |||||||||| ||||||||||||| ||  |  | ||||||| ||||  ||||||||| |||   | |||||||||  |||||||||  ||||||||||||    
T  7982153 tcattaagggcaaaatggtcatttcatgtgtcacttgttgactcatacatgtcctttcccaatcaaattctgccacatcatcaccacctcactaatcatg 7982252  T
Q  125 tgccacatatgtaatcaaatggtattaggaccaaa 159  Q
    |||||| |  ||||| |||||   |||||||||||    
T  7982253 tgccacgtcggtaattaaatgtgtttaggaccaaa 7982287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 133
Target Start/End: Original strand, 34404850 - 34404956
Alignment:
Q  27 attaagggtaaaatggtcattttatacgaaatttgttgagtcatcaatgtccttttccagatagattctgccatgtcatcaccatgtcactaatcatgtg 126  Q
    |||||||| | ||||||||||||| | | ||||||||| |||| | ||||||||| ||||  ||||| ||||| |||||| |||  ||||| || |||||    
T  34404850 attaagggcagaatggtcattttagatggaatttgttgtgtcaaccatgtcctttcccagtcagattatgccacgtcatcgccacatcacttattatgtg 34404949  T
Q  127 ccacata 133  Q
     ||||||    
T  34404950 tcacata 34404956  T

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