View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_low_3 (Length: 466)
Name: NF17606_low_3
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 427; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 427; E-Value: 0
Query Start/End: Original strand, 17 - 455
Target Start/End: Original strand, 51010418 - 51010856
Alignment:
| Q |
17 |
gaaaacaacaacactctcaaatccaacacagaagaggaacatgataacaaaagcttgatgacagaaaataatcaatatatgtttgtggatcctttagaca |
116 |
Q |
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| T |
51010418 |
gaaaacaacaacactctcaaatccaacacagaagaggaacatgatagcaaaagcttgatgacagaaaataatcaatatgtgtttgtggatcctttagaca |
51010517 |
T |
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| Q |
117 |
caaaaaagaagcaagaaaatgttgttggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaag |
216 |
Q |
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| T |
51010518 |
caaaaaagaagcaagaaaatgttgttggcagatcagattcaatgtcagattgcagtgatcaaaatgaagaagaggatgatggaaaatataggagaagaag |
51010617 |
T |
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| Q |
217 |
tggaaaaggaaaccaatcaaagaaccttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatc |
316 |
Q |
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| T |
51010618 |
tggaaaaggaaaccaatcaaagaaccttgttgctgagagaaaaagaaggaagaaactgaatgataggttatataaccttcgttcattggttccaagaatc |
51010717 |
T |
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| Q |
317 |
tcaaagcttgatagagcttctattcttggtgatgctattgaatttgtgaaggatttgcagaaacaagtgaaggaacttcaagatgaacttgaggaaaatt |
416 |
Q |
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| T |
51010718 |
tcaaagcttgatagagcttctattcttggtgatgctattgaatttgtgaaggatttgcagaagcaagtgaaggaacttcaagatgaacttgaggaaaatt |
51010817 |
T |
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| Q |
417 |
cagaaacaggaactgaaagtaactgcgtatatgttgatg |
455 |
Q |
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| T |
51010818 |
cagaaacaggaactgaaagtaactgcgtatatgttgatg |
51010856 |
T |
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