View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_low_5 (Length: 397)
Name: NF17606_low_5
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 381
Target Start/End: Complemental strand, 42744927 - 42744545
Alignment:
| Q |
1 |
cacagagcgaataaaaatagcttataaagccagtcctaatatctgagaggcggaaactaattctgctataagcataccggaatacacaactaattccttc |
100 |
Q |
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| T |
42744927 |
cacagagcgaataaaaatagcttataaagccagtcctaatatctgagaggcggaaactaattctgctataagcataccggaatacacaactaattccttc |
42744828 |
T |
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| Q |
101 |
aaccaactaataaataattttttcgtgacaataaagtctctagccgtatcaataactatgcatatgtatgcannnnnnnnnnnn------acaaaatcaa |
194 |
Q |
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| T |
42744827 |
aaccaactaataa----ttttttcgtgacaataaagtctctagccgtatcaataactatgcatatgtatgcatgtgtgtgtgtgtttttgacaaaatcaa |
42744732 |
T |
|
| Q |
195 |
attgggtgtaatgtaccgttttcaaaagagggagagaatctgcatctggtatgccattggggcaatgttgagcaacctctgtcctaatacgatcttgcca |
294 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42744731 |
attgggtgtaccgtaccgttttcaaaagagggagagaatctgcatctggtatgccattggggcaatgttgagcaacctctgtcctaatacgatcttgcca |
42744632 |
T |
|
| Q |
295 |
ttcagggtatagagcaagaagcatcaaactccaagaagctgcaacagcagtagtttcatgaccagcaaagtatatgtttttacagtt |
381 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42744631 |
ttcagggtatagagcaagaagcatcaaactccaagaagctgcaacagcagtagtttcatgaccagcaaagtatatgtttttacagtt |
42744545 |
T |
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