View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_low_6 (Length: 376)
Name: NF17606_low_6
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 300; Significance: 1e-168; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 300; E-Value: 1e-168
Query Start/End: Original strand, 39 - 361
Target Start/End: Original strand, 55309373 - 55309700
Alignment:
| Q |
39 |
taacttaacaaagtgtctataagtgcatgtttagattgacagtgaatgtggcatacatatccaaacatagagttttctattgctttgc-----aactaac |
133 |
Q |
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| T |
55309373 |
taacttaacaaagtgtctataagtgcatgtttagattgacagtgaatgtggcatacatatccaaacatagagttttctattgctttgccagagaactaac |
55309472 |
T |
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| Q |
134 |
taattagagagttcaaattcggcatgacacaatgtgcaatcaatcctattacacttaattaaaccagctcaaaactataaggaatgcataaaaatggggt |
233 |
Q |
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| T |
55309473 |
taattagagagttcaaattcggcatgacacaatgtgcaatcaatcctattacacttaattaaaccagctcaaaactacaaggaatgcataaaaatggggt |
55309572 |
T |
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| Q |
234 |
tgaactgcaaaatatcaagtctcattacaatttgggcctgcctattataacaacgtacaacgtgttgtatatcaactggtgtacaattcatttgaaaata |
333 |
Q |
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| T |
55309573 |
tgaactgcaaaatatcaagtctcattacaatttgggtctgcctattataacaacgtacaacgtgttgtatatcaactggtgtacaattcatttgaaaata |
55309672 |
T |
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| Q |
334 |
agaaataatttttcaaaatcttaaaaat |
361 |
Q |
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| T |
55309673 |
agaaataatttttcaaaatcttaaaaat |
55309700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 55309171 - 55309212
Alignment:
| Q |
1 |
tgcacacagcgattttatgtggtttatcaaatataatctaac |
42 |
Q |
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| T |
55309171 |
tgcacacaacgattttatgtggtttatcaaatataatctaac |
55309212 |
T |
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