View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17606_low_7 (Length: 296)
Name: NF17606_low_7
Description: NF17606
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17606_low_7 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 29 - 296
Target Start/End: Complemental strand, 42640018 - 42639751
Alignment:
| Q |
29 |
tgtttgtattaatacctttatgtttaactttttcccattttctgttcagaactatagcaatatttgctgcattatgtgtctattatatagaagggcgctc |
128 |
Q |
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| T |
42640018 |
tgtttgtattaatacctttatgtttaattttttcctattttctgtttagaactatagcaatatttgctgcattatatgtctattatatagaagggcgctc |
42639919 |
T |
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| Q |
129 |
gagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcnnnnnnnnnnnnnacccccaaaaatatttttgtattaagcaata |
228 |
Q |
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| T |
42639918 |
gagaagtgtgacaacttagcagttctgttgctttcttggaagtgtaaaacaaaatctttttctttttttatcccgaaaaatatttttctattaagcaata |
42639819 |
T |
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| Q |
229 |
taaaggataaaggacttcagaaatgccattagttggactttggcttgttcagtattttaggaagatat |
296 |
Q |
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| T |
42639818 |
taaaggataaaggacttaagagatgccattagttggactttggcttgttccacatattaggaagatat |
42639751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 90 - 296
Target Start/End: Original strand, 42565977 - 42566183
Alignment:
| Q |
90 |
atttgctgcattatgtgtctattatatagaagggcgctcgagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcnnnnn |
189 |
Q |
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| T |
42565977 |
atttgctgcattatgtgtctattatatagaagggcgcttgagaagtgtgacaacttagcagttctattgctttcttcgaactgcaaaacaaaatcttttt |
42566076 |
T |
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| Q |
190 |
nnnnnnnnacccccaaaaatatttttgtattaagcaatataaaggataaaggacttcagaaatgccattagttggactttggcttgttcagtattttagg |
289 |
Q |
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| T |
42566077 |
ctttttttatccccaaaaatatttttgtattaagcaatataaaggataaaggacttcagaaatgccattagttggactttagcttgttccgtattttagg |
42566176 |
T |
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| Q |
290 |
aagatat |
296 |
Q |
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||||||| |
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| T |
42566177 |
aagatat |
42566183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 12 - 68
Target Start/End: Original strand, 42565924 - 42565980
Alignment:
| Q |
12 |
gaagaatataaagtttatgtttgtattaatacctttatgtttaactttttcccattt |
68 |
Q |
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| T |
42565924 |
gaagaatataaagtttatgtttgtattaatacctttatgtttaactttttcccattt |
42565980 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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