View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_high_13 (Length: 390)
Name: NF17607_high_13
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_high_13 |
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Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 4972963 - 4972598
Alignment:
| Q |
17 |
aggtttaattattttagctgctggttttttccaaaagcaaagaagaactatgatcagaatcaccaacacaaacacagctatgataataactatatacttc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4972963 |
aggtttaattattttagctgctggttttttccaaaagcaaagaagaactatgatcagaatcaccatcacaaacacagctatgataataactatatacttc |
4972864 |
T |
|
| Q |
117 |
caataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972863 |
caataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtt |
4972764 |
T |
|
| Q |
217 |
tcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4972763 |
tcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctgg |
4972664 |
T |
|
| Q |
317 |
aaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctc |
382 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4972663 |
aaggttattcgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctc |
4972598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 17 - 382
Target Start/End: Complemental strand, 4990871 - 4990506
Alignment:
| Q |
17 |
aggtttaattattttagctgctggttttttccaaaagcaaagaagaactatgatcagaatcaccaacacaaacacagctatgataataactatatacttc |
116 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
4990871 |
aggtttaattattttagctgctggttttttccaaaagcaaagaagaactatgatcagaatcaccatcacaaacacagctatgataataactatatacttc |
4990772 |
T |
|
| Q |
117 |
caataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtt |
216 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990771 |
caataatttccaaaagttttggggtggtcttgacttgcttgctttccatcatgtgaaggatccgaggcagaaggcaacggtgtatgtgactgattttgtt |
4990672 |
T |
|
| Q |
217 |
tcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctgg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4990671 |
tcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataaggtgcggctgg |
4990572 |
T |
|
| Q |
317 |
aaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttggcatgttcatctc |
382 |
Q |
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||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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|
| T |
4990571 |
aaggttattcgattgatcgagtaacttacgacgcgcataattgattagatttggcatgttcatctc |
4990506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 207 - 369
Target Start/End: Original strand, 35833262 - 35833424
Alignment:
| Q |
207 |
tgattttgtttcttattcgcatctggaacagctggaaaagatccactactaatgctaattggaaggttactgaaatctgttttaggtccaccactataag |
306 |
Q |
| |
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||||||||||||||||| |||||||| ||||| || |||||||||||||| || |||||||| ||||| | | | |||||||||| ||||||| |
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| T |
35833262 |
tgattttgtttcttattggcatctggcacagccgggaaagatccactacttattgaaattggaataacactgatctgtatagtaggtccaccgctataag |
35833361 |
T |
|
| Q |
307 |
gtgcggctggaaggttattcgattgatcgagtaacttacgatgcgcataattgattagatttg |
369 |
Q |
| |
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|||| |||| ||||||||| || ||||| || ||||||||| | ||| || |||||||||||| |
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|
| T |
35833362 |
gtgcagctgcaaggttattggactgatcaagcaacttacgacgtgcagaactgattagatttg |
35833424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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