View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_high_14 (Length: 386)
Name: NF17607_high_14
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_high_14 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 345; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 345; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 12473859 - 12474235
Alignment:
| Q |
10 |
aacaaaatcaattattctgacaggaaaattctacagtcttccttataattaaggacatttgatcgttaaagggacacattctctaaaccctaaaaacttc |
109 |
Q |
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| T |
12473859 |
aacaaaatcaatgattccgacaggaaaattctacagtcttccttataattaaggacagatgatcgttaaagggacacattctctaaaccctaaaaacttc |
12473958 |
T |
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| Q |
110 |
accccctttgatcaccgactaacttgattattgtagtgtttgcaagtatacaatcccttatgaagagctatagtcgtcctttcttccaccactctggctt |
209 |
Q |
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| T |
12473959 |
accccctttgatcactgactaacttgattattgtagtgtttgcaagtatacaatcctttatgaagagctatcgtcgtcctttcttccaccactctggctt |
12474058 |
T |
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| Q |
210 |
tcgatttaggtccactccggcttttgatttaggtcctttcttccttattcaatcttaataaaatgaagtttttaatgaacattatttttatgtatcgttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474059 |
tcgatttaggtccactccggcttttgatttaggtcctttcttccttattcaatcttaataaaatgaagtttttaatgaacattatttttatgtatcgttt |
12474158 |
T |
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| Q |
310 |
tgaacacctaaaatcaactatatatcgagcaatgagtctccaaagaagtagcttaggttgtgacaccgaagaagtta |
386 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12474159 |
tgaacacctacaatcaactatatatcgagcaatgagtctccaaagaagtagcttaggttgtgacaccgaagaagtta |
12474235 |
T |
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