View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17607_high_4 (Length: 530)

Name: NF17607_high_4
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17607_high_4
NF17607_high_4
[»] chr2 (10 HSPs)
chr2 (16-482)||(15925455-15925922)
chr2 (17-178)||(30257773-30257931)
chr2 (79-169)||(36186612-36186700)
chr2 (38-160)||(40876936-40877054)
chr2 (27-169)||(5163781-5163919)
chr2 (75-202)||(16646928-16647053)
chr2 (79-175)||(32415357-32415449)
chr2 (81-120)||(38134112-38134151)
chr2 (38-145)||(28556632-28556734)
chr2 (79-116)||(6621358-6621395)
[»] chr5 (11 HSPs)
chr5 (75-202)||(3193491-3193616)
chr5 (36-169)||(502803-502929)
chr5 (17-178)||(12263639-12263798)
chr5 (21-145)||(16570523-16570642)
chr5 (73-178)||(18626691-18626794)
chr5 (36-145)||(32257712-32257816)
chr5 (74-150)||(18600221-18600294)
chr5 (150-201)||(18600489-18600540)
chr5 (79-178)||(20870669-20870766)
chr5 (79-120)||(7886661-7886702)
chr5 (78-126)||(3596956-3597003)
[»] chr4 (12 HSPs)
chr4 (75-202)||(2113874-2113999)
chr4 (39-169)||(36071559-36071685)
chr4 (17-169)||(23870026-23870174)
chr4 (18-117)||(12320383-12320481)
chr4 (74-183)||(3643133-3643240)
chr4 (75-115)||(50521290-50521330)
chr4 (61-115)||(40807924-40807978)
chr4 (150-204)||(48653776-48653830)
chr4 (75-169)||(29118506-29118599)
chr4 (162-204)||(29369856-29369898)
chr4 (74-169)||(43515859-43515952)
chr4 (85-121)||(5627536-5627572)
[»] chr8 (16 HSPs)
chr8 (16-176)||(26835589-26835745)
chr8 (18-178)||(13580351-13580507)
chr8 (17-145)||(22930300-22930423)
chr8 (74-145)||(13236216-13236284)
chr8 (73-120)||(17786557-17786604)
chr8 (74-150)||(18987193-18987266)
chr8 (74-120)||(34142058-34142104)
chr8 (74-168)||(9191228-9191320)
chr8 (79-120)||(32036788-32036829)
chr8 (38-108)||(28376657-28376725)
chr8 (88-202)||(31277936-31278049)
chr8 (79-121)||(28310231-28310273)
chr8 (77-176)||(43872544-43872641)
chr8 (17-120)||(4350717-4350821)
chr8 (79-124)||(26801891-26801936)
chr8 (88-202)||(41849429-41849540)
[»] chr7 (15 HSPs)
chr7 (17-178)||(35812593-35812751)
chr7 (17-183)||(21828140-21828301)
chr7 (40-120)||(3940700-3940778)
chr7 (19-202)||(26914312-26914490)
chr7 (61-169)||(42335947-42336053)
chr7 (79-178)||(26448411-26448508)
chr7 (75-202)||(33480460-33480584)
chr7 (79-183)||(3351119-3351221)
chr7 (39-121)||(32982336-32982416)
chr7 (74-115)||(26912361-26912402)
chr7 (21-120)||(9429385-9429482)
chr7 (79-169)||(12177847-12177934)
chr7 (79-212)||(48393239-48393372)
chr7 (75-120)||(21129376-21129421)
chr7 (162-238)||(21136238-21136314)
[»] scaffold0777 (1 HSPs)
scaffold0777 (75-202)||(5880-6005)
[»] chr3 (9 HSPs)
chr3 (73-241)||(39838500-39838665)
chr3 (39-178)||(15670919-15671054)
chr3 (75-169)||(33510099-33510191)
chr3 (74-120)||(19149899-19149945)
chr3 (75-178)||(27538778-27538879)
chr3 (88-169)||(168688-168766)
chr3 (38-169)||(11383591-11383720)
chr3 (75-120)||(33682711-33682756)
chr3 (88-124)||(47000910-47000946)
[»] chr6 (12 HSPs)
chr6 (17-142)||(12174299-12174419)
chr6 (38-120)||(9815721-9815801)
chr6 (74-202)||(31153606-31153732)
chr6 (74-202)||(34540829-34540955)
chr6 (76-178)||(31787851-31787951)
chr6 (17-120)||(10668928-10669028)
chr6 (79-145)||(34573213-34573276)
chr6 (123-198)||(5608092-5608167)
chr6 (88-178)||(11274601-11274688)
chr6 (90-169)||(35121949-35122026)
chr6 (17-120)||(13229286-13229388)
chr6 (96-169)||(33344877-33344948)
[»] chr1 (8 HSPs)
chr1 (18-183)||(1240407-1240572)
chr1 (38-202)||(3265435-3265594)
chr1 (74-183)||(35405370-35405477)
chr1 (62-162)||(33735759-33735857)
chr1 (38-120)||(8246769-8246849)
chr1 (74-178)||(15103040-15103142)
chr1 (150-183)||(45385222-45385255)
chr1 (88-204)||(35204186-35204299)
[»] scaffold0531 (1 HSPs)
scaffold0531 (32-145)||(9695-9803)
[»] scaffold0527 (2 HSPs)
scaffold0527 (96-241)||(1701-1845)
scaffold0527 (96-241)||(9764-9908)
[»] scaffold0328 (1 HSPs)
scaffold0328 (88-124)||(4833-4869)


Alignment Details
Target: chr2 (Bit Score: 325; Significance: 0; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 16 - 482
Target Start/End: Original strand, 15925455 - 15925922
Alignment:
Q  16 agcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatatt 115  Q
    |||||||||| || || |||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||    
T  15925455 agcaccattttttaaggggtatcaaaattattatttttactttgtattgtaagtattgtatagatatatttctttttaactcgctttaattaattatatt 15925554  T
Q  116 gaaaaatatatatttctagagaactttgataatgatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataattaaaaagcacaacttcat 215  Q
    |||||| ||||||||||||| |||||| |||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||||||||||||||||||    
T  15925555 gaaaaaaatatatttctagaaaactttaataatgatgaatcttttgtaacaaaaaatacaaaaggaaagacgttcaaataattaaaaagcacaacttcat 15925654  T
Q  216 tgatttgtttaggacatcaaaaatctgaggactggacctgaattaacccataaggactagtatgatcagttcatgtaacgtcgccaacgtcttc-tttaa 314  Q
    ||||| |||||||||||||||||||| ||||  |  |||||||| |||||||||| ||||||| ||||||||| ||||||||| |||| ||||| |||||    
T  15925655 tgattcgtttaggacatcaaaaatcttaggatcgaccctgaattgacccataaggtctagtataatcagttcacgtaacgtcgtcaacctcttcttttaa 15925754  T
Q  315 ctcttgaaaattggctccacgcttctccgtccattcaaatgtatttccttttcatgtcaacaacatcatgggcgt-aaaatcctttagaatccttctatg 413  Q
    |||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    |||||||||||||||||||||    
T  15925755 ctcttgaaaagtggcttcacgcttctccgtccattcaaatgt-tttccttttcatgtcaacaacatcatgggcgtctttatcctttagaatccttctatg 15925853  T
Q  414 aaccttatgttgtaactttgcccaagaaaacatcgtacttctcctaccaactatacatggtttttccca 482  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  15925854 aaccttatgttgtaactttgcccaagaaaacatcgtacttctcctaccaactatacatggttttgccca 15925922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 30257931 - 30257773
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagta-tagtatagatatatttctttttaactcgctttgattaattatatt 115  Q
    ||||||||  |||| ||| |||||||||||| |||||||||   ||||| | || || |||||||||||||||||| || ||| ||||||||||||||||    
T  30257931 gcaccattattttaaaggcatcaaaattattttttttactta--atagttaatactaatatagatatatttcttttcaattcggtttgattaattatatt 30257834  T
Q  116 gaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaaga 178  Q
    ||||   |||||||| |||||||||||||| ||  || ||||||||| ||||||| || |||||    
T  30257833 gaaa---atatatttttagagaactttgattataaataaatcttttgaaacaaaaaatgcaaga 30257773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 79 - 169
Target Start/End: Complemental strand, 36186700 - 36186612
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    |||||||||||||||| || |||||||||||||||||||||   |||||||| |||||||||||||| ||  || |||||||||||||||||    
T  36186700 atatatttctttttaattctctttgattaattatattgaaa---atatatttttagagaactttgattataaataaatcttttgcaacaaaa 36186612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 38 - 160
Target Start/End: Complemental strand, 40877054 - 40876936
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagaga 137  Q
    |||||||||||||||||||| |||  || |||||  |||| |||||||||||||||||| | || |||||||| ||||||||   |||||||| || |||    
T  40877054 caaaattattatttttacttggta--gttagtattatataaatatatttctttttaacttgtttggattaattctattgaaa---atatatttttataga 40876960  T
Q  138 actttgataatga-tgaatctttt 160  Q
    || ||||| |||| ||||||||||    
T  40876959 accttgattatgagtgaatctttt 40876936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 27 - 169
Target Start/End: Original strand, 5163781 - 5163919
Alignment:
Q  27 tttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatat 126  Q
    ||||| || |||||||||||||||||||||| |||  || ||||   |||| |||||| ||||||||| ||| ||||||||||||||||| | ||||| |    
T  5163781 tttaggggcatcaaaattattatttttacttagta--gttagtactatataaatatatatctttttaattcggtttgattaattatattg-agaatat-t 5163876  T
Q  127 atttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    |||| |||| ||||||||| ||  |||||||||||| |||||||    
T  5163877 attt-tagaaaactttgattataaatgaatcttttgtaacaaaa 5163919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 16647053 - 16646928
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagata 173  Q
    |||||||||||||||||||| | | ||||||||||| ||||||||   |||| ||| ||||||| ||| || ||  ||||||||| |||||||||| |||    
T  16647053 atagatatatttctttttaatttgttttgattaattctattgaaa---atatctttttagagaattttaattataaatgaatcttgtgcaacaaaaaata 16646957  T
Q  174 caagaggaaagacgttcaaataattaaaa 202  Q
     |||| |||| |  || ||||||||||||    
T  16646956 aaagaagaaaaatattaaaataattaaaa 16646928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 175
Target Start/End: Original strand, 32415357 - 32415449
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagataca 175  Q
    |||||||||||||||||||  ||||||||||| ||||||     |||||||| |||||||| | ||| ||| ||| |||||||||||||||| |||||    
T  32415357 atatatttctttttaactcattttgattaattttattga-----atatatttttagagaacctcgattatgaatgcatcttttgcaacaaaaaataca 32415449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 81 - 120
Target Start/End: Original strand, 38134112 - 38134151
Alignment:
Q  81 atatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||| |||||||||||||||| ||||    
T  38134112 atatttctttttaactcgatttgattaattatattaaaaa 38134151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 38 - 145
Target Start/End: Complemental strand, 28556734 - 28556632
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagaga 137  Q
    |||||||||||||||||||| |||  || ||||   |||||||| ||||| ||| || ||| ||||||||||||||||   ||| |||||||| || |||    
T  28556734 caaaattattatttttacttagta--gttagtactatatagatacatttcgtttaaattcggtttgattaattatatt---aaaaatatatttttaaaga 28556640  T
Q  138 actttgat 145  Q
    ||||||||    
T  28556639 actttgat 28556632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 116
Target Start/End: Original strand, 6621358 - 6621395
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||||||||||||| |||||||||||| |||||    
T  6621358 atatatttctttttaactccctttgattaattttattg 6621395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 9e-25; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 3193616 - 3193491
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagata 173  Q
    |||||||||||||||||||| | ||||||| ||||||||||||||   |||| ||| || ||||||||||| ||| ||||||||||||||| |||| ||     
T  3193616 atagatatatttctttttaaattgctttgaataattatattgaaa---atatgtttttaaagaactttgattatgaatgaatcttttgcaataaaaaatg 3193520  T
Q  174 caagaggaaagacgttcaaataattaaaa 202  Q
    ||||| ||||||| |||||||||||||||    
T  3193519 caagaagaaagacattcaaataattaaaa 3193491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 36 - 169
Target Start/End: Original strand, 502803 - 502929
Alignment:
Q  36 atcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctaga 135  Q
    |||||||||||||||||||||| |   ||| |||||  |||||||||||||||||||||||  |||||||||||| ||||||||   |||||||| ||||    
T  502803 atcaaaattattatttttacttag---agttagtattatatagatatatttctttttaact--ctttgattaattctattgaaa---atatatttttaga 502894  T
Q  136 gaactttgataatg-atgaatcttttgcaacaaaa 169  Q
    |||||||||| ||| ||||||||||||||| ||||    
T  502895 gaactttgattatgaatgaatcttttgcaaaaaaa 502929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 17 - 178
Target Start/End: Complemental strand, 12263798 - 12263639
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttcttttt--aactcgctttgattaattatat 114  Q
    ||||||||| ||||| || | ||||||||||||||||||||   || || ||||   ||||||||| ||| |||||  || ||||||||||||||| |||    
T  12263798 gcaccatttttttaggggcaccaaaattattatttttactta--atggttagtactatatagatatttttttttttttaattcgctttgattaattctat 12263701  T
Q  115 tgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaaga 178  Q
    |||||   |||||||| || ||||||||||| || |||||||||||||||| ||||||| |||||    
T  12263700 tgaaa---atatatttttaaagaactttgattatagatgaatcttttgcaataaaagatgcaaga 12263639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 21 - 145
Target Start/End: Complemental strand, 16570642 - 16570523
Alignment:
Q  21 catttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    ||||| |||||||| ||||||||||||||||||||||  ||  ||  |||   ||||||||||||||||||||| || |||||||||||| ||||   ||    
T  16570642 catttttttagaggcatcaaaattattatttttacttatta--gttggtaccatatagatatatttctttttaattcactttgattaattctatt---aa 16570548  T
Q  121 atatatatttctagagaactttgat 145  Q
    | |||||||| ||||||||||||||    
T  16570547 aaatatatttttagagaactttgat 16570523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 73 - 178
Target Start/End: Original strand, 18626691 - 18626794
Alignment:
Q  73 gtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaaga 171  Q
    |||||||||||||||||||||  | | ||||||||||| ||||||| ||   |||||| | |||||||||||| ||  ||||||||| |||||||||| |    
T  18626691 gtatagatatatttctttttactttgttttgattaattctattgaagaa---atattttttgagaactttgattataaatgaatcttgtgcaacaaaaaa 18626787  T
Q  172 tacaaga 178  Q
    |||||||    
T  18626788 tacaaga 18626794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 36 - 145
Target Start/End: Complemental strand, 32257816 - 32257712
Alignment:
Q  36 atcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctaga 135  Q
    |||||||| ||||||||||||| |||  || |||||   |||||||||||| ||||||| | ||||||||||||| ||||||||   ||||| || ||||    
T  32257816 atcaaaataattatttttacttagta--gttagtattacatagatatatttttttttaatttgctttgattaattttattgaaa---atatacttttaga 32257722  T
Q  136 gaactttgat 145  Q
    ||||||||||    
T  32257721 gaactttgat 32257712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Original strand, 18600221 - 18600294
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga 150  Q
    ||||||||| ||||||||| | ||| ||||||||||||||||||||   |||| ||| |||||||||||||| ||||    
T  18600221 tatagatatctttctttttgaatcgatttgattaattatattgaaa---atatgtttttagagaactttgattatga 18600294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 150 - 201
Target Start/End: Original strand, 18600489 - 18600540
Alignment:
Q  150 atgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataattaaa 201  Q
    |||| |||||||||| |||| |||||||| |||||| |||||||||||||||    
T  18600489 atgattcttttgcaataaaaaatacaagaagaaagatgttcaaataattaaa 18600540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 20870669 - 20870766
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaag 177  Q
    |||||||||||||||| || |||||||||||| |||||| |   |||||||| |||| ||||||||| ||  |||||| || |||||||||| || ||||    
T  20870669 atatatttctttttaattccctttgattaattttattgata---atatatttttagataactttgattataaatgaatattctgcaacaaaaaatgcaag 20870765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 120
Target Start/End: Complemental strand, 7886702 - 7886661
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||| ||||||||||| ||||||||||||||| |||||||||    
T  7886702 atatgtttctttttaattcgctttgattaattctattgaaaa 7886661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 78 - 126
Target Start/End: Complemental strand, 3597003 - 3596956
Alignment:
Q  78 gatatatttctttttaactcgctttgattaattatattgaaaaatatat 126  Q
    ||||||||||||||||| ||| ||||||||||| |||| ||||||||||    
T  3597003 gatatatttctttttaattcgttttgattaattctatt-aaaaatatat 3596956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 2113874 - 2113999
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagata 173  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||   |||| ||| || ||||| ||||| ||| || |||||||||||| |||| |||    
T  2113874 atagatatatttctttctaaattgctttgattaattatattgaaa---atatgtttttaaagaaccttgattatgaattaatcttttgcaataaaaaata 2113970  T
Q  174 caagaggaaagacgttcaaataattaaaa 202  Q
    ||||| ||||||| |||||||||||||||    
T  2113971 caagaagaaagacattcaaataattaaaa 2113999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 39 - 169
Target Start/End: Complemental strand, 36071685 - 36071559
Alignment:
Q  39 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaa 138  Q
    |||||||||||||||||||   ||||| ||||   ||||||||||||||||||||| |  ||||||||||||  |||||||   |||||||| |||||||    
T  36071685 aaaattattatttttacttg--atagttagtactatatagatatatttctttttaattttctttgattaattcaattgaaa---atatatttttagagaa 36071591  T
Q  139 ctttgataat-gatgaatcttttgcaacaaaa 169  Q
    ||||||| ||  ||||||||| ||||||||||    
T  36071590 ctttgattataaatgaatcttatgcaacaaaa 36071559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 17 - 169
Target Start/End: Original strand, 23870026 - 23870174
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    |||||| || ||||| || | |||||||||||||||||||| |||  || ||||   ||||||||||| | ||||||| ||| ||||||||||| |||||    
T  23870026 gcaccacttttttaggggcaccaaaattattatttttacttagta--gttagtactatatagatatatatttttttaattcgttttgattaattctattg 23870123  T
Q  117 aaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    |||   |||||||| |||| ||||||||| ||  |||||| |||||||||||||    
T  23870124 aaa---atatatttttagataactttgattataaatgaatattttgcaacaaaa 23870174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 18 - 117
Target Start/End: Original strand, 12320383 - 12320481
Alignment:
Q  18 caccatttctttagaggtatcaaaattatta-tttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    |||||||  ||||| || || |||||||||| ||||||||| |||  || |||||| ||||||||||| ||||||||| ||| |||||||||||||||||    
T  12320383 caccattattttaggggcatgaaaattattactttttacttagta--gttagtataatatagatatatatctttttaattcggtttgattaattatattg 12320480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 183
Target Start/End: Complemental strand, 3643240 - 3643133
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagat 172  Q
    ||||||||||||||||||||| | || |||||||||||||||||||| |   ||||| || ||| ||||||||||  |||||| || |||||||||| ||    
T  3643240 tatagatatatttctttttaatttgcattgattaattatattgaaaagt---tatttttaaagagctttgataataaatgaattttgtgcaacaaaaaat 3643144  T
Q  173 acaagaggaaa 183  Q
     ||||| ||||    
T  3643143 ccaagaagaaa 3643133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 75 - 115
Target Start/End: Complemental strand, 50521330 - 50521290
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatatt 115  Q
    |||||||||||||||||||||||| ||||||||||||||||    
T  50521330 atagatatatttctttttaactcgttttgattaattatatt 50521290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 115
Target Start/End: Complemental strand, 40807978 - 40807924
Alignment:
Q  61 atagtaagtatagtatagatatatttctttttaactcgctttgattaattatatt 115  Q
    ||||| |||||  ||||||||||||||||||||| ||||||||||||||| ||||    
T  40807978 atagttagtattatatagatatatttctttttaattcgctttgattaattctatt 40807924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 150 - 204
Target Start/End: Original strand, 48653776 - 48653830
Alignment:
Q  150 atgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataattaaaaag 204  Q
    |||||||||||||||||||| || ||||| ||||||| ||| |||||||||||||    
T  48653776 atgaatcttttgcaacaaaacatgcaagaagaaagacattcgaataattaaaaag 48653830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 75 - 169
Target Start/End: Original strand, 29118506 - 29118599
Alignment:
Q  75 atagatatatttctttttaactcgc-tttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaa 169  Q
    |||||||||||||||||||| | || ||| ||||||||||||||||   |||| ||| || ||||||||||| ||| |||||| |||||||| ||||    
T  29118506 atagatatatttctttttaaattgcttttaattaattatattgaaa---atatgtttttaaagaactttgattatgaatgaatattttgcaataaaa 29118599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 204
Target Start/End: Complemental strand, 29369898 - 29369856
Alignment:
Q  162 caacaaaagatacaagaggaaagacgttcaaataattaaaaag 204  Q
    |||||||| |||||||| ||||||| |||||||||||||||||    
T  29369898 caacaaaaaatacaagaagaaagacattcaaataattaaaaag 29369856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 74 - 169
Target Start/End: Complemental strand, 43515952 - 43515859
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    ||||||||||| ||||||||| | | ||||||||||||||||   ||  |||||||  |||| ||||||||| ||  ||||||||||||||||||||    
T  43515952 tatagatatatatctttttaatttggtttgattaattatatt---aagaatatattgttagaaaactttgattataaatgaatcttttgcaacaaaa 43515859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 85 - 121
Target Start/End: Original strand, 5627536 - 5627572
Alignment:
Q  85 ttctttttaactcgctttgattaattatattgaaaaa 121  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  5627536 ttctttttaattcgttttgattaattatattgaaaaa 5627572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 4e-21; HSPs: 16)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 16 - 176
Target Start/End: Complemental strand, 26835745 - 26835589
Alignment:
Q  16 agcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatatt 115  Q
    |||||||||| ||||| || | ||||||||||||||||||||   ||||| |||| | |||| |||||||||||||||| |  |||| ||||||| ||||    
T  26835745 agcaccatttttttaggggcaccaaaattattatttttactt--aatagttagtacaatataaatatatttctttttaattttcttttattaattctatt 26835648  T
Q  116 gaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaa 176  Q
    ||||   |||||||| |||||||||||||| ||  ||||||||| |||||||||| ||||||    
T  26835647 gaaa---atatatttttagagaactttgattataaatgaatcttgtgcaacaaaaaatacaa 26835589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 178
Target Start/End: Complemental strand, 13580507 - 13580351
Alignment:
Q  18 caccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattga 117  Q
    |||||||| ||||| || | ||||||||||||||||||||   ||||| |||||  |||| |||||||||||||||| ||||||||||||||| ||||||    
T  13580507 caccatttttttaggggcaccaaaattattatttttactta--atagttagtattatataaatatatttctttttaattcgctttgattaattctattga 13580410  T
Q  118 aaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaaga 178  Q
    ||   |||||||| || | ||||||| | ||  |||||| ||||||||||||| || |||||    
T  13580409 aa---atatatttttaaataactttggttataaatgaatattttgcaacaaaaaatgcaaga 13580351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 17 - 145
Target Start/End: Original strand, 22930300 - 22930423
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||| || || || | ||||||||| ||||||||||   ||||| ||||   ||||||||||| ||||||||| ||||||||||||||| |||||    
T  22930300 gcaccattttttcaggggcaccaaaattataatttttactta--atagttagtactatatagatatatatctttttaattcgctttgattaattctattg 22930397  T
Q  117 aaaaatatatatttctagagaactttgat 145  Q
    |||||   |||||| |||| |||||||||    
T  22930398 aaaaa---atatttttagataactttgat 22930423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 145
Target Start/End: Original strand, 13236216 - 13236284
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgat 145  Q
    |||| |||||||||||||||| ||||||||||||||| || |||||   |||||||| ||||||||||||||    
T  13236216 tatatatatatttctttttaattcgctttgattaattctaatgaaa---atatatttttagagaactttgat 13236284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 73 - 120
Target Start/End: Complemental strand, 17786604 - 17786557
Alignment:
Q  73 gtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    ||||| ||||||||||||||||||||||||||||||| ||||| ||||    
T  17786604 gtatacatatatttctttttaactcgctttgattaatcatattaaaaa 17786557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 18987266 - 18987193
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga 150  Q
    ||||||||||||||||| ||| |   ||||||||||||||||||||    ||||||| |||||||||||||||||||    
T  18987266 tatagatatatttctttgtaattatgtttgattaattatattgaaa---ttatatttttagagaactttgataatga 18987193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Original strand, 34142058 - 34142104
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||||||  |||||||||||||| |||||||||    
T  34142058 tatagatatatttctttttaatccgctttgattaattctattgaaaa 34142104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 168
Target Start/End: Original strand, 9191228 - 9191320
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaa 168  Q
    ||||||||||||| ||||||| || |||||||||||| |||| |||   |||||||| ||||||||| |||| ||  ||||||||||| |||||||    
T  9191228 tatagatatatttatttttaattcactttgattaattctattcaaa---atatatttttagagaactatgattataaatgaatcttttacaacaaa 9191320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 79 - 120
Target Start/End: Original strand, 32036788 - 32036829
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||||| || ||||||||||||||||||    
T  32036788 atatatttctttttaactcgtttggattaattatattgaaaa 32036829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 38 - 108
Target Start/End: Original strand, 28376657 - 28376725
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaa 108  Q
    |||||||||||||||||||| |||  || ||||   ||||||||||||||||||||| ||| |||||||||    
T  28376657 caaaattattatttttacttagta--gttagtactatatagatatatttctttttaattcgttttgattaa 28376725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 31277936 - 31278049
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaagac 186  Q
    |||||||||| |||||||||||| ||||| ||||||| ||||| |||||||| ||||| ||  |||||||||||||| | ||| || ||||| ||||||     
T  31277936 tttttaactcactttgattaattctattg-aaaatatttattt-tagagaaccttgattataaatgaatcttttgcacctaaaaattcaagaagaaagag 31278033  T
Q  187 gttcaaataattaaaa 202  Q
     ||| |||||| ||||    
T  31278034 attcgaataataaaaa 31278049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 121
Target Start/End: Original strand, 28310231 - 28310273
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaa 121  Q
    ||||||| |||||||||||| ||||||||||| ||||||||||    
T  28310231 atatattactttttaactcgttttgattaattctattgaaaaa 28310273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 77 - 176
Target Start/End: Original strand, 43872544 - 43872641
Alignment:
Q  77 agatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagataca 175  Q
    ||||||||||||| |||| | ||||| ||||||| ||||| ||   |||||||| || ||||||||||| ||  ||||||||| |||||||||| |||||    
T  43872544 agatatatttcttcttaatttgctttcattaattctattgtaa---atatatttttaaagaactttgattataaatgaatcttgtgcaacaaaaaataca 43872640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 4350821 - 4350717
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagata---tatttctttttaactcgctttgattaattata 113  Q
    |||||| || |||||||| | ||||||||||||||||| || |  |||| |||||  ||||||||   ||||| ||||||| |||||||| |||||| ||    
T  4350821 gcaccacttttttagaggcaccaaaattattatttttatttag--tagttagtattatatagatatattatttttttttaattcgctttggttaattcta 4350724  T
Q  114 ttgaaaa 120  Q
    |||||||    
T  4350723 ttgaaaa 4350717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 79 - 124
Target Start/End: Original strand, 26801891 - 26801936
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatat 124  Q
    ||||||||  ||||||||| ||||||||||||||||||||| ||||    
T  26801891 atatattttgttttaactcactttgattaattatattgaaatatat 26801936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 88 - 202
Target Start/End: Original strand, 41849429 - 41849540
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga-tgaatcttttgcaacaaaagatacaagaggaaagac 186  Q
    ||||||||| || |||||||||| |||||||||   ||||||| || ||||  ||||| || | |||||||||| |||||||| | |||| | |||||||    
T  41849429 tttttaacttgcattgattaattctattgaaaa---tatatttttaaagaatcttgattattaatgaatctttttcaacaaaaaa-acaaaaagaaagac 41849524  T
Q  187 gttcaaataattaaaa 202  Q
     |||||||||||||||    
T  41849525 attcaaataattaaaa 41849540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 4e-21; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 17 - 178
Target Start/End: Original strand, 35812593 - 35812751
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||| ||||| || ||||||||||||||||||||||   ||| | ||||   ||||||||||||||||||||| |||||||||| |||| |||||    
T  35812593 gcaccatttttttaggggcatcaaaattattatttttactta--ataattagtactatatagatatatttctttttaattcgctttgatcaattctattg 35812690  T
Q  117 aaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaaga 178  Q
    | ||  |||||||| |||| ||||||||| ||  |||||| ||||||||||||| || |||||    
T  35812691 ataa--atatatttttagataactttgattataaatgaatattttgcaacaaaaaatgcaaga 35812751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 17 - 183
Target Start/End: Original strand, 21828140 - 21828301
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||||||||| || || |||||||||||||||||||   ||||| | || |  |||||||||||||||||||||| | ||||||||||  |||||    
T  21828140 gcaccatttctttaggggcataaaaattattatttttacttc--atagtcactacaaaatagatatatttctttttaacttgttttgattaatgctattg 21828237  T
Q  117 aaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaa 183  Q
     ||||||    ||| |||||||||||||| ||  ||||||||| |||||||||| ||| |||| ||||    
T  21828238 -aaaata---ctttttagagaactttgattataaatgaatcttgtgcaacaaaaaataaaagacgaaa 21828301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 40 - 120
Target Start/End: Complemental strand, 3940778 - 3940700
Alignment:
Q  40 aaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||| |||  ||||||||| ||||||||||||||||||||| |  |||||||||||| |||| ||||    
T  3940778 aaattattatttttacttagta--gtaagtataatatagatatatttctttttaatttactttgattaattctatttaaaa 3940700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 26914490 - 26914312
Alignment:
Q  19 accatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaa 118  Q
    ||||||| ||||| ||||||||||||||||||||||||| |  |||| |||||  |||| |||| |||  |||||| ||| |||||||||||||||||||    
T  26914490 accatttttttag-ggtatcaaaattattatttttacttag--tagttagtattatatacatatgtttacttttaattcgttttgattaattatattgaa 26914394  T
Q  119 aaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataattaaaa 202  Q
    |   |||||||| || | ||| || || ||  |||||| ||||||||||||| || ||||| |||| |  || ||||||||||||    
T  26914393 a---atatatttttaaataacgttaattataaatgaatattttgcaacaaaaaatgcaagaagaaaaatattaaaataattaaaa 26914312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 169
Target Start/End: Complemental strand, 42336053 - 42335947
Alignment:
Q  61 atagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttt 159  Q
    ||||| |||||  ||||||||||||||||||||| ||| ||| |||||||||| |||||   |||||||| || | ||||||||| ||  ||||||||||    
T  42336053 atagttagtattatatagatatatttctttttaattcggtttaattaattatagtgaaa---atatatttttaaaaaactttgattataaatgaatcttt 42335957  T
Q  160 tgcaacaaaa 169  Q
    ||||||||||    
T  42335956 tgcaacaaaa 42335947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 79 - 178
Target Start/End: Original strand, 26448411 - 26448508
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaag 177  Q
    |||||||||||||||| || |||||||||||| || |   |||  ||||||| |||||||||||||||||  |||||||||||||||||||| || ||||    
T  26448411 atatatttctttttaattcactttgattaattctact---aaaagtatatttttagagaactttgataataaatgaatcttttgcaacaaaaaatgcaag 26448507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 75 - 202
Target Start/End: Complemental strand, 33480584 - 33480460
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga-tgaatcttttgcaacaaaagata 173  Q
    |||||||||||||||| ||| | |||||||||||||||||| ||||   ||| ||| || ||||| || || |||| | |||||| ||||| |||| |||    
T  33480584 atagatatatttctttctaaattgctttgattaattatattaaaaa---tatgtttttaaagaacctt-attatgaattaatcttctgcaataaaaaata 33480489  T
Q  174 caagaggaaagacgttcaaataattaaaa 202  Q
    ||||| ||||||| |||||||||||||||    
T  33480488 caagaagaaagacattcaaataattaaaa 33480460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 3351119 - 3351221
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaag 177  Q
    |||||||||||||||| ||||||||||||||| ||||||||    ||||||| |||| ||||||||| ||  |||||| |||| |||||||| || ||||    
T  3351119 atatatttctttttaattcgctttgattaattctattgaaa---ttatatttttagataactttgattataaatgaatattttacaacaaaaaatgcaag 3351215  T
Q  178 aggaaa 183  Q
    | ||||    
T  3351216 aagaaa 3351221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 39 - 121
Target Start/End: Original strand, 32982336 - 32982416
Alignment:
Q  39 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaa 121  Q
    ||||||||||||||||||| |||  || || | |||||| |||||||| ||||||||||  ||||||||||| ||||||||||    
T  32982336 aaaattattatttttacttggta--gttaggagagtatacatatatttttttttaactcattttgattaattctattgaaaaa 32982416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 74 - 115
Target Start/End: Original strand, 26912361 - 26912402
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatatt 115  Q
    ||||||||||||||||||||| ||||||||||||||| ||||    
T  26912361 tatagatatatttctttttaattcgctttgattaattctatt 26912402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 21 - 120
Target Start/End: Complemental strand, 9429482 - 9429385
Alignment:
Q  21 catttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    ||||| ||||| || | |||||||| |||||||| ||   ||||| |||||  |||| ||||||||||||||| |||| ||||||||||| |||||||||    
T  9429482 catttttttaggggcaccaaaattagtatttttattta--atagttagtattatataaatatatttctttttatctcgttttgattaattctattgaaaa 9429385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 169
Target Start/End: Original strand, 12177847 - 12177934
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatgatgaatcttttgcaacaaaa 169  Q
    |||||| ||||||||| ||| ||| ||||||| |||||||||   ||||||| |||| ||||||  ||  |||||||||||||||||||||    
T  12177847 atatatatctttttaattcggtttaattaattttattgaaaa---tatatttttagaaaactttattatagatgaatcttttgcaacaaaa 12177934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 212
Target Start/End: Complemental strand, 48393372 - 48393239
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga-tgaatcttttgcaacaaaagatacaag 177  Q
    |||| ||||||||||||| | || ||||| || | || |||||||||||||| |||| || |||||| || | | |||||||  |||||||| ||| |||    
T  48393372 atatttttctttttaacttgtttagattagttctgtt-aaaaatatatatttttagataattttgattataaataaatctttcacaacaaaaaatataag 48393274  T
Q  178 aggaaagacgttcaaataattaaaaagcacaactt 212  Q
    | ||||||| || ||||||||||||  ||||||||    
T  48393273 aagaaagacatttaaataattaaaagacacaactt 48393239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 21129421 - 21129376
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||||| | | ||||||||||| |||||||||    
T  21129421 atagatatatttctttttaatttggtttgattaattctattgaaaa 21129376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 21136238 - 21136314
Alignment:
Q  162 caacaaaagatacaagaggaaagacgttcaaataattaaaa-agcacaacttcattgatttgtttaggacatcaaaaa 238  Q
    |||||||  |||||||| |||||| |||||||||||||||| |||| ||||| ||||||| ||| | |||||||||||    
T  21136238 caacaaataatacaagaagaaaga-gttcaaataattaaaagagcataactttattgattcgttcaagacatcaaaaa 21136314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 51; Significance: 6e-20; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 75 - 202
Target Start/End: Original strand, 5880 - 6005
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagata 173  Q
    |||||||||||||||| ||| | ||||||||||||||||||||||   |||| ||| || |||| |||||| ||| |||||| |||||||| |||| |||    
T  5880 atagatatatttctttctaaattgctttgattaattatattgaaa---atatgtttttaaagaattttgattatgaatgaattttttgcaataaaaaata 5976  T
Q  174 caagaggaaagacgttcaaataattaaaa 202  Q
    || || ||||||| |||||||||||||||    
T  5977 catgaagaaagacattcaaataattaaaa 6005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 6e-20; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 241
Target Start/End: Original strand, 39838500 - 39838665
Alignment:
Q  73 gtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaac-tttgataatga-tgaatcttttgcaacaaaag 170  Q
    ||||| |||||||||||||||||||  | |||||||||||||||||||     ||||| || ||||| |||||| |||| ||||||||||||||||||||    
T  39838500 gtataaatatatttctttttaactcattatgattaattatattgaaaa-----tatttttaaagaacctttgattatgaatgaatcttttgcaacaaaag 39838594  T
Q  171 atacaagaggaaagacgttcaaataattaaaaagcacaacttcattgatttgtttaggacatcaaaaatct 241  Q
    |||||| |  || ||  ||| | ||||||||||||||||||| ||| |||  || ||||| ||||||||||    
T  39838595 atacaataataatgatattcgactaattaaaaagcacaactttattaattcattcaggacgtcaaaaatct 39838665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 39 - 178
Target Start/End: Original strand, 15670919 - 15671054
Alignment:
Q  39 aaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaa 138  Q
    ||||||||||||||||||| |||  || | || | ||||||||||||||||||||| | | ||||||||||| ||||||||   |||| ||| |||| ||    
T  15670919 aaaattattatttttacttagta--gttattacaatatagatatatttctttttaatttgttttgattaattctattgaaa---atatctttttagaaaa 15671013  T
Q  139 ctttgataat-gatgaatcttttgcaacaaaagatacaaga 178  Q
    ||||||| ||  ||||||||| |||||||||| ||||||||    
T  15671014 ctttgattataaatgaatcttgtgcaacaaaatatacaaga 15671054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 75 - 169
Target Start/End: Complemental strand, 33510191 - 33510099
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    |||||||||||||||||||| ||| |||||||||||  |||||||   |||||||| ||||||||||| || ||  ||||||||||||||||||||    
T  33510191 atagatatatttctttttaattcgttttgattaattccattgaaa---atatatttttagagaactttaattataaatgaatcttttgcaacaaaa 33510099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 74 - 120
Target Start/End: Complemental strand, 19149945 - 19149899
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||| |||||||||||||||| ||||||||||||||||||| |||||    
T  19149945 tataaatatatttctttttaattcgctttgattaattatatcgaaaa 19149899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 75 - 178
Target Start/End: Complemental strand, 27538879 - 27538778
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttga-taatgatgaatcttttgcaacaaaagata 173  Q
    |||||||||||| ||||||| || |||||||||||| ||||||||   |||||||| || | |||||||| ||   |||||| ||||||||||||| |||    
T  27538879 atagatatatttatttttaattctctttgattaattctattgaaa---atatatttttaaataactttgattagaaatgaatattttgcaacaaaaaata 27538783  T
Q  174 caaga 178  Q
    |||||    
T  27538782 caaga 27538778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 169
Target Start/End: Complemental strand, 168766 - 168688
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaa 169  Q
    ||||||||||||| ||||||||| ||||||||   |||||||| |||||||| ||||| ||| |||||||||||| |||||||    
T  168766 tttttaactcgctgtgattaattctattgaaa---atatattt-tagagaaccttgattatgaatgaatcttttgtaacaaaa 168688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 38 - 169
Target Start/End: Original strand, 11383591 - 11383720
Alignment:
Q  38 caaaattattatttttactttgta--tagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctaga 135  Q
    ||||||||||||||||| || |||  |||||| |||| |||| |||||| | | ||||| |||||||||||||||  |||||||||   |||||| ||||    
T  11383591 caaaattattatttttatttagtagttagtaa-tata-tatatatatatatatctttaattcgctttgattaattcaattgaaaaa---atatttttaga 11383685  T
Q  136 gaactttgataat-gatgaatcttttgcaacaaaa 169  Q
     ||||||||| ||  |||||| |||||||||||||    
T  11383686 taactttgattataaatgaatattttgcaacaaaa 11383720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 75 - 120
Target Start/End: Complemental strand, 33682756 - 33682711
Alignment:
Q  75 atagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||||| || |||||||||||| |||| ||||    
T  33682756 atagatatatttctttttaattcactttgattaattctattaaaaa 33682711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 124
Target Start/End: Complemental strand, 47000946 - 47000910
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatat 124  Q
    ||||||| ||||||||||||||| |||||||||||||    
T  47000946 tttttaattcgctttgattaattctattgaaaaatat 47000910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 49; Significance: 9e-19; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 17 - 142
Target Start/End: Original strand, 12174299 - 12174419
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||| || ||||| | |||||||||||||||||||| |||  || ||||   ||||||||||||||||||||| ||| ||||||||||||||||     
T  12174299 gcaccattttttaagaggcaccaaaattattatttttacttagta--gttagtactatatagatatatttctttttaattcgttttgattaattatatt- 12174395  T
Q  117 aaaaatatatatttctagagaacttt 142  Q
      ||| |||||||| |||||||||||    
T  12174396 --aaaaatatatttttagagaacttt 12174419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 9815801 - 9815721
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    |||||||||||||||||||| |||  || | ||   ||||||||||||||||||||| ||||||||||||| | |||||||||    
T  9815801 caaaattattatttttacttagta--gttaatactatatagatatatttctttttaattcgctttgattaactttattgaaaa 9815721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 31153732 - 31153606
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatga-tgaatcttttgcaacaaaagat 172  Q
    |||||||||||||  |||||| ||  ||| |||||||||||||||||   ||| ||| || | ||||||||| |||| |||||||||||||| |||| ||    
T  31153732 tatagatatatttaattttaaatccttttaattaattatattgaaaa---tatgtttttaaataactttgatcatgaatgaatcttttgcaataaaaaat 31153636  T
Q  173 acaagaggaaagacgttcaaataattaaaa 202  Q
     |||||| ||| ||  ||||||||||||||    
T  31153635 gcaagagaaaaaacactcaaataattaaaa 31153606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 202
Target Start/End: Complemental strand, 34540955 - 34540829
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagat 172  Q
    |||||||||||||||| |||||||| |||||||| || ||||||||   |||||||| || | ||  ||||| ||| || ||| ||||||||||||| ||    
T  34540955 tatagatatatttcttattaactcgttttgattagttctattgaaa---atatatttttaaataatcttgattatgaataaattttttgcaacaaaaaat 34540859  T
Q  173 acaagaggaaagacgttcaaataattaaaa 202  Q
    ||| || |||| || ||||||| |||||||    
T  34540858 acatgaagaaatacattcaaatgattaaaa 34540829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 31787851 - 31787951
Alignment:
Q  76 tagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatac 174  Q
    ||||||||||| ||||||| ||||||||||||||| ||||||||   |||||||| |||| |||||| || ||  |||||| ||||||||| ||| || |    
T  31787851 tagatatatttatttttaattcgctttgattaattctattgaaa---atatatttgtagataactttaattataaatgaatattttgcaactaaaaatgc 31787947  T
Q  175 aaga 178  Q
    ||||    
T  31787948 aaga 31787951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 120
Target Start/End: Complemental strand, 10669028 - 10668928
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattg 116  Q
    ||||||||| ||||| || | ||||||||||||||||||||    |||| |||||  ||||||||||| |||||| || ||  |||||||||||||||||    
T  10669028 gcaccatttttttaggggcaccaaaattattatttttactt--attagttagtattatatagatatatatcttttgaattc-atttgattaattatattg 10668932  T
Q  117 aaaa 120  Q
    ||||    
T  10668931 aaaa 10668928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 145
Target Start/End: Complemental strand, 34573276 - 34573213
Alignment:
Q  79 atatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgat 145  Q
    |||||||||||||||| ||| ||||||||||| ||||||||   |||||||| || |||||||||||    
T  34573276 atatatttctttttaattcggtttgattaattttattgaaa---atatatttttaaagaactttgat 34573213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 123 - 198
Target Start/End: Original strand, 5608092 - 5608167
Alignment:
Q  123 atatatttctagagaactttgataatgatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataatt 198  Q
    |||||||||||||||| |||||| ||||   |||||||| ||||||| ||| || | ||||||| |||||||||||    
T  5608092 atatatttctagagaattttgattatgaatgatcttttgtaacaaaaaatataaaaagaaagacattcaaataatt 5608167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 88 - 178
Target Start/End: Original strand, 11274601 - 11274688
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagatacaaga 178  Q
    ||||||| | |||||||||||||||||||| ||    |||||| ||||||| |||||| ||| |||||| |||||||||||||  |||||||    
T  11274601 tttttaaattgctttgattaattatattgacaa----atatttttagagaattttgattatgaatgaatattttgcaacaaaaagtacaaga 11274688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 90 - 169
Target Start/End: Complemental strand, 35122026 - 35121949
Alignment:
Q  90 tttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    ||||| ||||||||||||||| ||||||||   |||||||| |||| ||||||||| ||  |||||| |||||||||||||    
T  35122026 tttaattcgctttgattaattctattgaaa---atatatttttagataactttgattataaatgaatattttgcaacaaaa 35121949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 120
Target Start/End: Original strand, 13229286 - 13229388
Alignment:
Q  17 gcaccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcg-ctttgattaattatatt 115  Q
    ||||||||| |||||||| | |||||||||||||||||||| |  ||||  ||| | |||||| | |||||||||||| | | | |||||||||| ||||    
T  13229286 gcaccatttttttagaggcaccaaaattattatttttacttag--tagtcggtacaatatagaaaaatttctttttaatttgtccttgattaattctatt 13229383  T
Q  116 gaaaa 120  Q
    |||||    
T  13229384 gaaaa 13229388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 96 - 169
Target Start/End: Original strand, 33344877 - 33344948
Alignment:
Q  96 tcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaa 169  Q
    ||||||||||||||| ||||||||   |||||||| |||| ||||||||| ||  |||||| |||||||||||||    
T  33344877 tcgctttgattaattctattgaaa---atatatttttagataactttgattataaatgaatattttgcaacaaaa 33344948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 9e-19; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 18 - 183
Target Start/End: Original strand, 1240407 - 1240572
Alignment:
Q  18 caccatttctttagaggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattga 117  Q
    |||||||| ||||| || |  ||||||||||||||||||| |||  || ||||   |||| ||||||||||||||||  |||||||||||||| ||||||    
T  1240407 caccatttttttaggggcactaaaattattatttttacttagta--gttagtactatataaatatatttctttttaatccgctttgattaattctattga 1240504  T
Q  118 aaa-atatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaa 183  Q
    ||| |||| | ||| |||||||||| ||| ||  |||||||||||||||||||| || ||||| ||||    
T  1240505 aaatatatttttttttagagaacttcgattataaatgaatcttttgcaacaaaaaatgcaagaagaaa 1240572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 38 - 202
Target Start/End: Complemental strand, 3265594 - 3265435
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagaga 137  Q
    ||||||||||||||||||||   ||||| |||||   ||||||||||||||||||||||| |||||| ||||| |  |||||   |||| |||  |||||    
T  3265594 caaaattattatttttactta--atagttagtattaaatagatatatttctttttaactccctttga-taattcttatgaaa---atatgttttaagaga 3265501  T
Q  138 actttgataat-gatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaataattaaaa 202  Q
    ||||| || ||  |||||||||||||||||||| || || || ||||||| ||| |||||||||||    
T  3265500 acttttattatcaatgaatcttttgcaacaaaaaatgcacgaagaaagacattcgaataattaaaa 3265435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 74 - 183
Target Start/End: Original strand, 35405370 - 35405477
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttga-taatgatgaatcttttgcaacaaaagat 172  Q
    |||| |||||||||||||||| |||||||||||||||||||| |||||   |||||| |||| |||||||| ||   |||||| ||||||||||||| ||    
T  35405370 tatatatatatttctttttaattcgctttgattaattatatttaaaaa---atatttttagataactttgattagaaatgaatattttgcaacaaaaaat 35405466  T
Q  173 acaagaggaaa 183  Q
     ||||| ||||    
T  35405467 gcaagaagaaa 35405477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 62 - 162
Target Start/End: Complemental strand, 33735857 - 33735759
Alignment:
Q  62 tagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatctttt 160  Q
    |||| ||||| ||||| |||||||||||||||| | | ||||||||||||||||||||   |||||||| |||| ||||||||| ||  |||||||||||    
T  33735857 tagttagtattgtataaatatatttctttttaatttggtttgattaattatattgaaa---atatatttttagacaactttgattataaatgaatctttt 33735761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 38 - 120
Target Start/End: Complemental strand, 8246849 - 8246769
Alignment:
Q  38 caaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaa 120  Q
    ||||||||||||||||||||   ||||| ||||   ||||||||||||||||||||| | | ||||||||||| |||||||||    
T  8246849 caaaattattatttttactta--atagttagtactatatagatatatttctttttaatttgatttgattaattctattgaaaa 8246769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 74 - 178
Target Start/End: Complemental strand, 15103142 - 15103040
Alignment:
Q  74 tatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagat 172  Q
    ||||||||||||||||||||  | | ||||||||||| |||||||  |   |||||| |||||||||||||| ||  ||||||||| |||||||||| ||    
T  15103142 tatagatatatttctttttactttgttttgattaattctattgaagta---atatttttagagaactttgattataaatgaatcttgtgcaacaaaaaat 15103046  T
Q  173 acaaga 178  Q
    ||||||    
T  15103045 acaaga 15103040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 150 - 183
Target Start/End: Complemental strand, 45385255 - 45385222
Alignment:
Q  150 atgaatcttttgcaacaaaagatacaagaggaaa 183  Q
    |||||||||||||||||||| |||||||||||||    
T  45385255 atgaatcttttgcaacaaaaaatacaagaggaaa 45385222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 204
Target Start/End: Complemental strand, 35204299 - 35204186
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatatatatttctagagaactttgataatg-atgaatcttttgcaacaaaagatacaagaggaaagac 186  Q
    ||||||| | |||||||||||||||||||| ||    |||||| ||||||| |||||| ||| |||||| |||||||| ||||  |||||||  ||| ||    
T  35204299 tttttaaattgctttgattaattatattgacaa----atatttttagagaattttgattatgaatgaatattttgcaataaaaagtacaagaaaaaaaac 35204204  T
Q  187 gttcaaataattaaaaag 204  Q
     ||  |||||||||||||    
T  35204203 attggaataattaaaaag 35204186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0531 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0531
Description:

Target: scaffold0531; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 32 - 145
Target Start/End: Original strand, 9695 - 9803
Alignment:
Q  32 aggtatcaaaattattatttttactttgtatagtaagtatagtatagatatatttctttttaactcgctttgattaattatattgaaaaatatatatttc 131  Q
    ||||| ||||||||||||||||| || |||  || ||||   ||||||||||| ||||||||| ||| |||||||||||||||||| |   ||||||||     
T  9695 aggtaccaaaattattatttttatttagta--gttagtactatatagatatatatctttttaattcggtttgattaattatattgaga---atatatttt 9789  T
Q  132 tagagaactttgat 145  Q
    |||| |||||||||    
T  9790 tagaaaactttgat 9803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: scaffold0527
Description:

Target: scaffold0527; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 1701 - 1845
Alignment:
Q  96 tcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaat 194  Q
    ||||||| | ||||| |||||||||   ||||||| |||||||||||||| ||  || |||||||||||| |||| ||  |||| |||| |  || ||||    
T  1701 tcgctttaactaattttattgaaaa---tatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaat 1797  T
Q  195 aattaaaaag-cacaacttcattgatttgtttaggacatcaaaaatct 241  Q
    |||||||||| ||||| || |||| |||  ||||| ||||||||||||    
T  1798 aattaaaaagacacaatttaattgtttttcttagggcatcaaaaatct 1845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0527; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 96 - 241
Target Start/End: Original strand, 9764 - 9908
Alignment:
Q  96 tcgctttgattaattatattgaaaaatatatatttctagagaactttgataat-gatgaatcttttgcaacaaaagatacaagaggaaagacgttcaaat 194  Q
    ||||||| | ||||| |||||||||   ||||||| |||||||||||||| ||  || |||||||||||| |||| ||  |||| |||| |  || ||||    
T  9764 tcgctttaactaattttattgaaaa---tatatttttagagaactttgattataaataaatcttttgcaataaaaaatgaaagaagaaaaatattgaaat 9860  T
Q  195 aattaaaaag-cacaacttcattgatttgtttaggacatcaaaaatct 241  Q
    |||||||||| ||||| || |||| |||  ||||| ||||||||||||    
T  9861 aattaaaaagacacaatttaattgtttttcttagggcatcaaaaatct 9908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 4833 - 4869
Alignment:
Q  88 tttttaactcgctttgattaattatattgaaaaatat 124  Q
    ||||||||||| ||| |||||||||||||||||||||    
T  4833 tttttaactcgttttaattaattatattgaaaaatat 4869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University