View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17607_high_7 (Length: 486)

Name: NF17607_high_7
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17607_high_7
NF17607_high_7
[»] chr4 (8 HSPs)
chr4 (206-486)||(27481743-27482022)
chr4 (284-486)||(27461673-27461883)
chr4 (17-137)||(27522941-27523061)
chr4 (438-486)||(27521552-27521600)
chr4 (342-404)||(27521609-27521671)
chr4 (285-345)||(27521694-27521752)
chr4 (438-482)||(18985935-18985979)
chr4 (379-420)||(18985876-18985917)
[»] chr5 (14 HSPs)
chr5 (270-486)||(1757817-1758031)
chr5 (438-486)||(29425179-29425227)
chr5 (338-404)||(29166788-29166854)
chr5 (206-271)||(1757717-1757782)
chr5 (336-404)||(29425109-29425176)
chr5 (207-274)||(29166691-29166758)
chr5 (88-137)||(1753799-1753849)
chr5 (363-419)||(27918457-27918513)
chr5 (438-486)||(29568595-29568643)
chr5 (438-484)||(27918527-27918573)
chr5 (374-419)||(29568662-29568707)
chr5 (438-482)||(29166869-29166913)
chr5 (285-324)||(29568733-29568772)
chr5 (374-419)||(29569970-29570015)
[»] chr3 (1 HSPs)
chr3 (338-418)||(25518264-25518344)


Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 206 - 486
Target Start/End: Original strand, 27481743 - 27482022
Alignment:
Q  206 gagattggtacagtgagaattagttatcgtgggttcgatcctcggcgctcgaagtctctaactctatatcctacctacaaaaatcagttacccttgaaaa 305  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481743 gagattggtacagtgagaattagttatcatgggttcgatcctcggcgctcgaagtctctaactctatatcctacctacaaaaatcagttacccttgaaaa 27481842  T
Q  306 cctcaacaaatcatcatatagcatctctactatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaag 405  Q
    |||| ||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||| |||||||| |||||||||||| ||||||||||||||    
T  27481843 cctc-acaaatcatcatataccatctctcctatatatatactcaaaccatacctcttttttcataactctttgccactcacacttactttacaaccaaag 27481941  T
Q  406 ttcaaattcaaatctnnnnnnnnnnnnnnnnncaattcagaagaatgggtgatttacagattcaacaagaatccatgttga 486  Q
     ||||||||||||||                 |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27481942 ctcaaattcaaatctaaaaacaaaaaacaaaacaattcagaagaatgggtgatttacagattcaacaagaatccatgttga 27482022  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 284 - 486
Target Start/End: Original strand, 27461673 - 27461883
Alignment:
Q  284 aaaaatcagttacccttgaaaacctcaacaaatcatcatatagcatctctactatatatata--------ctcaaaccatccctcttttttcaaaactct 375  Q
    |||||||| ||||||||||||||||||||| ||||||||||| ||||||   ||||||||||        ||||||||||||||||||||||| ||||||    
T  27461673 aaaaatcaattacccttgaaaacctcaacagatcatcatataccatctcctatatatatatatatatacactcaaaccatccctcttttttcataactct 27461772  T
Q  376 ttcccactcacacttgctttacaaccaaagttcaaattcaaatctnnnnnnnnnnnnnnnnncaattcagaagaatgggtgatttacagattcaacaaga 475  Q
    || |||||||||||| |||||||| ||||||||||||||||||||                 ||||||||||||||||||||||||||||||||||||||    
T  27461773 ttgccactcacacttactttacaatcaaagttcaaattcaaatctaaaaacaaaagagaaaacaattcagaagaatgggtgatttacagattcaacaaga 27461872  T
Q  476 atccatgttga 486  Q
    |||||||||||    
T  27461873 atccatgttga 27461883  T

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Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 17 - 137
Target Start/End: Complemental strand, 27523061 - 27522941
Alignment:
Q  17 aaaaagtaaactatattgatttaacaataataattgaagtatatattgcgnnnnnnncatctgcagagaacacataattattggatagaatttagatagc 116  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||| |||||||||||||||||||||||||    
T  27523061 aaaaagtaaactatattgatttaacaataataattgaagtatatattgcggaaaaaatatctgcagagaacacagaattattggatagaatttagatagc 27522962  T
Q  117 aaaaacatggtttctccaatc 137  Q
    |||||||||||||||| ||||    
T  27522961 aaaaacatggtttctcaaatc 27522941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 27521600 - 27521552
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatgttga 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  27521600 caattcagaagaatgggtgatttacagattcaacaagaatccatgttga 27521552  T

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Target: chr4; HSP #5
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 342 - 404
Target Start/End: Complemental strand, 27521671 - 27521609
Alignment:
Q  342 tatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 404  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||| |||||||| ||||    
T  27521671 tatactcaaaccatccctcttttttcataactctttgccactcacacttactttacaatcaaa 27521609  T

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Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 285 - 345
Target Start/End: Complemental strand, 27521752 - 27521694
Alignment:
Q  285 aaaatcagttacccttgaaaacctcaacaaatcatcatatagcatctctactatatatata 345  Q
    ||||||||||||||||||||||||||||| ||||||||||| ||||||  |||||||||||    
T  27521752 aaaatcagttacccttgaaaacctcaacagatcatcatataccatctc--ctatatatata 27521694  T

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Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 438 - 482
Target Start/End: Original strand, 18985935 - 18985979
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatg 482  Q
    |||||||||||||||||||||||||| ||||||||||||||||||    
T  18985935 caattcagaagaatgggtgatttacaaattcaacaagaatccatg 18985979  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 379 - 420
Target Start/End: Original strand, 18985876 - 18985917
Alignment:
Q  379 ccactcacacttgctttacaaccaaagttcaaattcaaatct 420  Q
    |||||||||||| |||||| ||||||||||||||||||||||    
T  18985876 ccactcacacttactttacgaccaaagttcaaattcaaatct 18985917  T

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Target: chr5 (Bit Score: 119; Significance: 1e-60; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 270 - 486
Target Start/End: Original strand, 1757817 - 1758031
Alignment:
Q  270 tatatcctacctacaaaaatcagttacccttgaaaacctcaacaaatcatcatatagcatctctactatatatatactcaaaccatccctcttttttcaa 369  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||  ||||||||||||||||||||||||||||| ||||     
T  1757817 tatatcctacatacaaaaatcagttacccttgaaaatctcaacaaatcatcatataccatctc--ctatatatatactcaaaccatccctctttgttcat 1757914  T
Q  370 aactctttcccactcacacttgctttacaaccaaagttcaaattcaaatctnnnnnnnnnnnnnnnnncaattcagaagaatgggtgatttacagattca 469  Q
    |||||||| | |||||||||| |||||||||||||||||||||||||||||                 || |||||||||||||||||||||||||||||    
T  1757915 aactctttgcgactcacacttactttacaaccaaagttcaaattcaaatctaaaaacaaaaaagaaaacagttcagaagaatgggtgatttacagattca 1758014  T
Q  470 acaagaatccatgttga 486  Q
    |||||||||||||||||    
T  1758015 acaagaatccatgttga 1758031  T

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Target: chr5; HSP #2
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 438 - 486
Target Start/End: Original strand, 29425179 - 29425227
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatgttga 486  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  29425179 caattcagaagaatgggtgatttacagattcaacaagaatccatgttga 29425227  T

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Target: chr5; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 338 - 404
Target Start/End: Original strand, 29166788 - 29166854
Alignment:
Q  338 tatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 404  Q
    ||||||||||| |||| |||||||||||||| |||||||| |||||||||||| |||||||||||||    
T  29166788 tatatatactccaaccttccctcttttttcataactctttgccactcacacttactttacaaccaaa 29166854  T

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Target: chr5; HSP #4
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 206 - 271
Target Start/End: Original strand, 1757717 - 1757782
Alignment:
Q  206 gagattggtacagtgagaattagttatcgtgggttcgatcctcggcgctcgaagtctctaactcta 271  Q
    ||||||||||| |||||||||||||||||||||||||||||||| ||  |||||||| ||||||||    
T  1757717 gagattggtacggtgagaattagttatcgtgggttcgatcctcgacgtccgaagtctttaactcta 1757782  T

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Target: chr5; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 336 - 404
Target Start/End: Original strand, 29425109 - 29425176
Alignment:
Q  336 tatatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaa 404  Q
    |||||||||| ||||||| ||||||||||| || |||||||| |||||||||||| |||||||||||||    
T  29425109 tatatatataatcaaaccttccctcttttt-cataactctttgccactcacacttactttacaaccaaa 29425176  T

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Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 207 - 274
Target Start/End: Original strand, 29166691 - 29166758
Alignment:
Q  207 agattggtacagtgagaattagttatcgtgggttcgatcctcggcgctcgaagtctctaactctatat 274  Q
    |||| |||||| ||||| ||||||||||||||||||||||||| |||  ||||||||||||| |||||    
T  29166691 agatcggtacactgagagttagttatcgtgggttcgatcctcgacgcctgaagtctctaactttatat 29166758  T

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Target: chr5; HSP #7
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 88 - 137
Target Start/End: Original strand, 1753799 - 1753849
Alignment:
Q  88 acataattattggata-gaatttagatagcaaaaacatggtttctccaatc 137  Q
    |||||||||||||||| |||||||||||||||||||||||||||| |||||    
T  1753799 acataattattggataagaatttagatagcaaaaacatggtttcttcaatc 1753849  T

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Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 363 - 419
Target Start/End: Original strand, 27918457 - 27918513
Alignment:
Q  363 ttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 419  Q
    |||||| |||||||| ||||||| |||| |||| |||||||||||||||||||||||    
T  27918457 ttttcataactctttgccactcagacttactttgcaaccaaagttcaaattcaaatc 27918513  T

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Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 438 - 486
Target Start/End: Complemental strand, 29568643 - 29568595
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatgttga 486  Q
    |||||||||| |||| ||||| |||||||||||||||||||||||||||    
T  29568643 caattcagaaaaatgagtgatctacagattcaacaagaatccatgttga 29568595  T

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Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 438 - 484
Target Start/End: Original strand, 27918527 - 27918573
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatgtt 484  Q
    |||||||| |||||| ||||| |||||||||||||||||||||||||    
T  27918527 caattcagcagaatgagtgatctacagattcaacaagaatccatgtt 27918573  T

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Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 29568707 - 29568662
Alignment:
Q  374 ctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 419  Q
    |||| |||||||||||| ||||||||||||| ||||||||||||||    
T  29568707 ctttgccactcacacttactttacaaccaaaattcaaattcaaatc 29568662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 438 - 482
Target Start/End: Original strand, 29166869 - 29166913
Alignment:
Q  438 caattcagaagaatgggtgatttacagattcaacaagaatccatg 482  Q
    ||||| ||||||||| ||||| |||||||||||||||||||||||    
T  29166869 caattgagaagaatgagtgatctacagattcaacaagaatccatg 29166913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 29568772 - 29568733
Alignment:
Q  285 aaaatcagttacccttgaaaacctcaacaaatcatcatat 324  Q
    |||||||||||| |||||||||||||||||||| ||||||    
T  29568772 aaaatcagttacacttgaaaacctcaacaaatcttcatat 29568733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 374 - 419
Target Start/End: Complemental strand, 29570015 - 29569970
Alignment:
Q  374 ctttcccactcacacttgctttacaaccaaagttcaaattcaaatc 419  Q
    |||| |||||||||||  |||||| |||||||||||||||||||||    
T  29570015 ctttgccactcacactaactttactaccaaagttcaaattcaaatc 29569970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 338 - 418
Target Start/End: Original strand, 25518264 - 25518344
Alignment:
Q  338 tatatatactcaaaccatccctcttttttcaaaactctttcccactcacacttgctttacaaccaaagttcaaattcaaat 418  Q
    |||||||||||||||| |||||||||||||| |||||||| |||||||||||| ||||||||| ||| |||||||||||||    
T  25518264 tatatatactcaaaccttccctcttttttcacaactctttgccactcacacttactttacaacaaaaattcaaattcaaat 25518344  T

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