View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_high_8 (Length: 485)
Name: NF17607_high_8
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 362; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 362; E-Value: 0
Query Start/End: Original strand, 19 - 384
Target Start/End: Original strand, 35355159 - 35355524
Alignment:
| Q |
19 |
gcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacc |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355159 |
gcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacc |
35355258 |
T |
|
| Q |
119 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttag |
218 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355259 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttag |
35355358 |
T |
|
| Q |
219 |
cttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttt |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35355359 |
cttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttt |
35355458 |
T |
|
| Q |
319 |
agaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaacacaggt |
384 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
35355459 |
agaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaacacaggt |
35355524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 20 - 377
Target Start/End: Original strand, 35370607 - 35370964
Alignment:
| Q |
20 |
catcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacct |
119 |
Q |
| |
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|||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||| |
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|
| T |
35370607 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
35370706 |
T |
|
| Q |
120 |
cattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagc |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||| | ||||||||||||||||| ||||| |
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|
| T |
35370707 |
cattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
35370806 |
T |
|
| Q |
220 |
ttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttta |
319 |
Q |
| |
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||||| |||||||||||||||||||| ||||| ||||| ||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
35370807 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgttctctatgcttatgacttggatttgtggacgtgcctttgtttta |
35370906 |
T |
|
| Q |
320 |
gaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaa |
377 |
Q |
| |
|
||||||||| ||||||| |||| ||||| ||| ||||| |||||||||||||||||| |
|
|
| T |
35370907 |
gaaagcaactccttcaagaatctcaagttgcaatgttggcttataccaagatttaaaa |
35370964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 35381173 - 35381535
Alignment:
| Q |
19 |
gcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacc |
118 |
Q |
| |
|
||||||||||||||| ||| |||| |||||||| |||||||| || ||||||||||||||||| || || |||||||||||||||||||||||||| || |
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|
| T |
35381173 |
gcatcacaccaaatttaggtctaattactcactcttcatgcctatatatgactacatttatggcaccgtagataaatccacagatgctacatatgaagcc |
35381272 |
T |
|
| Q |
119 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttag |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| || |||||| | |||||||||||| |||| |||| |
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|
| T |
35381273 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttagttccatctatcaattacgtttaggctttacttcattag |
35381372 |
T |
|
| Q |
219 |
cttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttt |
318 |
Q |
| |
|
| |||||||||||||||||||||||||| ||| | ||||| ||||| |||||||||| || ||||||||| || |||||| || ||||||| ||||| || |
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|
| T |
35381373 |
cctccaatcctcaaacatctaaatggtacctatatttaatgtggccctttacaatgtgctatatgcttatgacatggattagtagacgtgcttttgtctt |
35381472 |
T |
|
| Q |
319 |
agaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaacaca |
381 |
Q |
| |
|
|||||||||||| ||||||||||| ||||||||| ||||| || |||||||||| |||||||| |
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|
| T |
35381473 |
agaaagcaacactttcaatgatctcaagttacaatgttggcttttaccaagattcaaaacaca |
35381535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 433 - 472
Target Start/End: Original strand, 35355573 - 35355612
Alignment:
| Q |
433 |
ccttggagaatgatttagtgattaccaatgtaatacccct |
472 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
35355573 |
ccttggagaatgatttagtgattaccaatgtaatatccct |
35355612 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 155; Significance: 4e-82; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 155; E-Value: 4e-82
Query Start/End: Original strand, 19 - 381
Target Start/End: Original strand, 19685151 - 19685513
Alignment:
| Q |
19 |
gcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacc |
118 |
Q |
| |
|
||||||||| ||||| ||| | || |||||||| |||||||| || |||||| ||||||||||||| ||| ||| |||| ||||||||||||||||| | |
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|
| T |
19685151 |
gcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatgctacatatgaagct |
19685250 |
T |
|
| Q |
119 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttag |
218 |
Q |
| |
|
| | || ||||| | ||||||||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | |||||||| |||||||||||| |
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|
| T |
19685251 |
tgttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagggcttgcttccttag |
19685350 |
T |
|
| Q |
219 |
cttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttt |
318 |
Q |
| |
|
| ||||| ||||||||||| ||||||||||| | ||||| ||||| |||||||||| |||||||||| | ||||||||| ||||| ||||||||||||| |
|
|
| T |
19685351 |
cctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatgtgctctatgcttttgacttggattagtggaagtgcctttgtttt |
19685450 |
T |
|
| Q |
319 |
agaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaacaca |
381 |
Q |
| |
|
|||||| ||| ||||||| ||||| ||| | || ||||| |||||||||||||||||||||| |
|
|
| T |
19685451 |
agaaagtaactccttcaaagatctcaagctgcagtgttggcttataccaagatttaaaacaca |
19685513 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 19 - 377
Target Start/End: Complemental strand, 19629500 - 19629142
Alignment:
| Q |
19 |
gcatcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacc |
118 |
Q |
| |
|
||||||||| ||||| ||| | || |||||||| |||||||| || |||||||||||||||||||||||| || |||||||||||||||||||||| | |
|
|
| T |
19629500 |
gcatcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatct |
19629401 |
T |
|
| Q |
119 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttag |
218 |
Q |
| |
|
| |||| ||||| | |||| |||||||||||||| ||||||||||||||||| ||||||||||| || | |||| | || ||||| ||||||||||||| |
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|
| T |
19629400 |
tgtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttag |
19629301 |
T |
|
| Q |
219 |
cttccaatcctcaaacatctaaatggtatctacacttaatatggccatttacaatgttctctatgcttatcacttggatttgtggacgtgcctttgtttt |
318 |
Q |
| |
|
| ||||| |||||||| |||||||||||||| | ||||| ||||| |||||| ||| |||||||||| | ||||||||| |||| | |||| ||||||| |
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|
| T |
19629300 |
cctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttacattgtgctctatgcttgtgacttggattagtgggcatgccattgtttt |
19629201 |
T |
|
| Q |
319 |
agaaagcaacaccttcaatgatcttaagttacaaagttggattataccaagatttaaaa |
377 |
Q |
| |
|
|||||| ||| |||||| ||||| ||| | || ||||| |||||||||||||||||| |
|
|
| T |
19629200 |
agaaagtaacttcttcaaagatctcaagctgcagtgttggcttataccaagatttaaaa |
19629142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 41 - 81
Target Start/End: Complemental strand, 2275407 - 2275367
Alignment:
| Q |
41 |
aactactcacttttcatgccaatgtatgactacatttatgg |
81 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
2275407 |
aactactcactcttcatgccactttatgactacatttatgg |
2275367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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