View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_10 (Length: 463)
Name: NF17607_low_10
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 19 - 444
Target Start/End: Complemental strand, 1248427 - 1248002
Alignment:
| Q |
19 |
atataaaactcatgtagagaattaaccatccttttatcattctttgctcagattcaaagggagaacaaatcaagaacaagaccaaattacttggcttgtt |
118 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
1248427 |
atataaaactcatgtagagaattaaccatccttttatcattctttgctcagattcaaagggagaacaaatcaagaacaagaccaacttacttggcttgtt |
1248328 |
T |
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| Q |
119 |
ctcccacattgtacatttattaataataatcattgaaaatgggcaactgtgctggcaaccctaggaccgacgaaagtgacgctccagtccctgtccccga |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1248327 |
ctcccacattgtacatttattaataataatcattgaaaatgggcaactgtgctggcaaccctaggaccgacgaaagtgacgctccagtccctgtccctga |
1248228 |
T |
|
| Q |
219 |
gcctgtcaccgaggaggttaaggttgaacagcaagccaaggagaccaaagctgaggagaccgttaaggcctccgacgataagtctctaggcaccttgctc |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
1248227 |
gcctgtcaccgaggaggttaaggttgaacagcaagccaaggagaccaaagctgaggagaccgttaaggcctctgacgataagtctctaggcaccttgctc |
1248128 |
T |
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| Q |
319 |
agtgaggtatgtattcttatataagcaatcatattcatgcacataaatccgatattgaatatccaacaccatatagttnnnnnnntgactaagtataaaa |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
1248127 |
agtgaggtatgtattcttatataagcaatcatattcatgcacataaatccgatattgaatatccaacaccatatagttaaaaaaatgactaagtataaaa |
1248028 |
T |
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| Q |
419 |
tagtcattcgtgaaattttcggtatt |
444 |
Q |
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|||||||||||||||||||||||||| |
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| T |
1248027 |
tagtcattcgtgaaattttcggtatt |
1248002 |
T |
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