View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_12 (Length: 401)
Name: NF17607_low_12
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 16 - 356
Target Start/End: Original strand, 38037790 - 38038130
Alignment:
| Q |
16 |
cctacttctaccaatacaatctacaagatcaaaacaccattcatagaccactctttttggttcatgtaagcttttttcttgaaatttaagttgatttatt |
115 |
Q |
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| T |
38037790 |
cctacttctaccaatacaatctacaagatcaaaacaccattcatagaccactctttttggttcatgtaagcttttttcttgaaatttaaattgatttatt |
38037889 |
T |
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| Q |
116 |
gttatgcatttgtttgttttcgttaatgctaattaaatttattagttgttttgtagagagctaaggattttttatcaaaatgaatctggaacctgagaga |
215 |
Q |
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| T |
38037890 |
gttatgcatttgtttgttttcgttaacgctaattaaatttattagttgttttgtagagagctaaggattttttatcaaaatgaatccggaacctgagaga |
38037989 |
T |
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| Q |
216 |
gtgtataaagaccttaacgaagagtcatgtggtgtttgtaaagacggaggagagttgatttgctgcgatagttgcccagcatcttttcatcaaagttgcc |
315 |
Q |
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| T |
38037990 |
gtgtataaagaccttaacgaagagtcatgtggtgtttgtaaagacggaggagagttgatttgctgcgatagttgtccagcagcttttcatcaaagttgtc |
38038089 |
T |
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| Q |
316 |
tcaacattaaagtttgtgccttaatctatgatcatggctac |
356 |
Q |
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| T |
38038090 |
tcaacattaaagtttgtgccttaatctatgatcatggctac |
38038130 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 91; Significance: 6e-44; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 73 - 313
Target Start/End: Original strand, 10625335 - 10625573
Alignment:
| Q |
73 |
tggttcatgtaagcttttttcttgaaatttaagttgatttattgttatgcatttgtttgttttcgttaatgctaattaaatttattagttgttttgtaga |
172 |
Q |
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| T |
10625335 |
tggttcatgtaagcttttttcgtgaaatttaaattgatttattgttatgcatttatttgttttcgttaacgctaactaaatttactaattgttttgtaga |
10625434 |
T |
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| Q |
173 |
gagctaaggattttttatcaaaatgaatctggaacctgagagagtgtataaagaccttaacgaagagtcatgtggtgtttgtaaagacggaggagagttg |
272 |
Q |
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| T |
10625435 |
gggctaagga--tcttatcaaaatggatatgtcatctcagagagtgtataagaattttaatgatgattcatgtggtgtttgtggagacgg-ggagattta |
10625531 |
T |
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| Q |
273 |
atttgctgcgatagttg-cccagcatcttttcatcaaagttg |
313 |
Q |
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| T |
10625532 |
atttgctgtgatagttgtcctcccagcttttcatcaaagttg |
10625573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 76 - 170
Target Start/End: Complemental strand, 10625847 - 10625754
Alignment:
| Q |
76 |
ttcatgtaagcttttttcttgaaatttaagttgatttattgttatgcatttgtttgttttcgttaatgctaattaaatttattagttgttttgta |
170 |
Q |
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| T |
10625847 |
ttcatgtaagcttttt-catgaaatttaaattgatttattgttatgcatttatttgttttcattaacgctaactaaatttattagttgttttgta |
10625754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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