View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_17 (Length: 316)
Name: NF17607_low_17
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_17 |
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Alignment Details
Target: chr2 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 299
Target Start/End: Original strand, 32218930 - 32219223
Alignment:
| Q |
1 |
cttttttcttaattatgactataacaaaggaaaacctgatggactggagcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctatt |
100 |
Q |
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||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||| | |
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| T |
32218930 |
cttttttcttaattatgcctataacaaaggaaaacctgaaggactggagcttttcaaactgtctttggcaaagaaaaaccagggagattgcgttgcta-t |
32219028 |
T |
|
| Q |
101 |
ggaagagttacaacatcttctctgttgaaaagaaataaagtggtagatatggnnnnnnnnnnnngcatgctgctgaggtgaaaagtttaactgacaaggt |
200 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||| |||||||||||| |
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| T |
32219029 |
ggaagagttacaacatcttctctgttgaaaagaaataaagtggcagatatgg----aaaaaaaagcatgctgctgaggtgaaaagttgaactgacaaggt |
32219124 |
T |
|
| Q |
201 |
ccaagagatggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcat |
299 |
Q |
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||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32219125 |
ccaagagatggagactaaacatagcaaagatatggttgcaatggaagaaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcat |
32219223 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 171; Significance: 8e-92; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 171; E-Value: 8e-92
Query Start/End: Original strand, 48 - 299
Target Start/End: Original strand, 19893677 - 19893922
Alignment:
| Q |
48 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaacatcttctctgttgaaaagaaataaagtggtaga |
147 |
Q |
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||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
19893677 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgctat-ggaagagttacaacatcttctctgttgaaaagaaataaagtggaagc |
19893775 |
T |
|
| Q |
148 |
tatggnnnnnnnnnnnngcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaag |
247 |
Q |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
19893776 |
tatggaaaaaaa-----gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactatacatagaaaggatatggctgcaatggaag |
19893870 |
T |
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| Q |
248 |
aaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcat |
299 |
Q |
| |
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|||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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| T |
19893871 |
aaaaattgcaagttcttctaagagtcatgctgaaccaaagcaacacaggcat |
19893922 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 19886998 - 19887051
Alignment:
| Q |
1 |
cttttttcttaattatgactataacaaaggaaaacctgatggactggagctttt |
54 |
Q |
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|
||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
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|
| T |
19886998 |
cttttttcttaattatgcttataacaaaggaaaacctgaaggactggagatttt |
19887051 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 167; Significance: 2e-89; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 48 - 299
Target Start/End: Complemental strand, 11490479 - 11490234
Alignment:
| Q |
48 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaacatcttctctgttgaaaagaaataaagtggtaga |
147 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
11490479 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgctat-ggaagagttacaacatcttctctgttgaaaagaaataaagtggcaga |
11490381 |
T |
|
| Q |
148 |
tatggnnnnnnnnnnnngcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaag |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||| |
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| T |
11490380 |
tatggaaaaaaa-----gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagaccatacatagaaaggatatggctgcaatggaag |
11490286 |
T |
|
| Q |
248 |
aaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcat |
299 |
Q |
| |
|
||||||||||||||||||| || |||||||||||||||||||||||| |||| |
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|
| T |
11490285 |
aaaaattgcaagttcttcttagagtcatgctgaaccaaagcaacacaggcat |
11490234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 48 - 299
Target Start/End: Original strand, 13778786 - 13779031
Alignment:
| Q |
48 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaacatcttctctgttgaaaagaaataaagtggtaga |
147 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||| |||||||||||||||| |||| |||||||||||||||||| || | | |
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| T |
13778786 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgctat-ggaagagttacaacatattctatgttgaaaagaaataaagcggcaaa |
13778884 |
T |
|
| Q |
148 |
tatggnnnnnnnnnnnngcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactaaacatagcaaggatatggctgcaatggaag |
247 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||| |
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| T |
13778885 |
tatggaaaaaaa-----gcatgctgctgaggtgaaaagtttaactgacaaggtccaagagatggagactatacatagaaaggatatggctgcaatggaag |
13778979 |
T |
|
| Q |
248 |
aaaaattgcaagttcttctaagggtcatgctgaaccaaagcaacacaagcat |
299 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||| |||| |
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|
| T |
13778980 |
aaaaattgcaagttcttctaagagtcatgctgaaccaaagcaacacaggcat |
13779031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 81; Significance: 4e-38; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 48 - 152
Target Start/End: Original strand, 24244914 - 24245017
Alignment:
| Q |
48 |
agcttttcaaactgtctttggcaaagaaaaaccagggaaattgcgctgctattggaagagttacaacatcttctctgttgaaaagaaataaagtggtaga |
147 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||| |
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| T |
24244914 |
agcttttcaaactgtctttggaaaagaaaaaccagggagattgcgctgctat-ggaagagttacaacatcttctctattgaaaagaaataaagtggcaga |
24245012 |
T |
|
| Q |
148 |
tatgg |
152 |
Q |
| |
|
||||| |
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|
| T |
24245013 |
tatgg |
24245017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 24240354 - 24240407
Alignment:
| Q |
1 |
cttttttcttaattatgactataacaaaggaaaacctgatggactggagctttt |
54 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
24240354 |
cttttttcttaattatgcttataacaaaggaaaacctgaaggactggagatttt |
24240407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 54
Target Start/End: Complemental strand, 32809757 - 32809704
Alignment:
| Q |
1 |
cttttttcttaattatgactataacaaaggaaaacctgatggactggagctttt |
54 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||| ||||||||| |||| |
|
|
| T |
32809757 |
cttttttcttaattatgcttataacaaaggaaaacctgaaggactggagatttt |
32809704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 258 - 299
Target Start/End: Original strand, 24245030 - 24245071
Alignment:
| Q |
258 |
agttcttctaagggtcatgctgaaccaaagcaacacaagcat |
299 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| |||| |
|
|
| T |
24245030 |
agttcttctaagagtcatgctgaaccaaagcaacacaggcat |
24245071 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 208 - 290
Target Start/End: Original strand, 8729402 - 8729484
Alignment:
| Q |
208 |
atggagactaaacatagcaaggatatggctgcaatggaagaaaaattgcaagttcttctaagggtcatgctgaaccaaagcaa |
290 |
Q |
| |
|
||||||| |||||||| || || ||||| |||||||| | ||||||||||||||||| ||| ||||||||||||||||||| |
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|
| T |
8729402 |
atggagaaaaaacatagtaaagagatggcagcaatggaggggaaattgcaagttcttcttaggttcatgctgaaccaaagcaa |
8729484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 140
Target Start/End: Original strand, 8729246 - 8729315
Alignment:
| Q |
70 |
aaagaaaaaccagggaaattgcgctgctattggaagagttacaacatcttctctgttgaaaagaaataaag |
140 |
Q |
| |
|
||||||||||| |||| | |||| ||| || ||||||||||||||| ||||||| |||||||||||||||| |
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|
| T |
8729246 |
aaagaaaaacctgggagagtgcgttgccat-ggaagagttacaacaccttctctcttgaaaagaaataaag |
8729315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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