View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_19 (Length: 305)
Name: NF17607_low_19
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_19 |
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Alignment Details
Target: chr2 (Bit Score: 263; Significance: 1e-146; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 21 - 291
Target Start/End: Original strand, 43246171 - 43246441
Alignment:
| Q |
21 |
agtggccactttattggtcacactatagctcatcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacac |
120 |
Q |
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| T |
43246171 |
agtggccactttattggttacactatagctcttcttaatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacac |
43246270 |
T |
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| Q |
121 |
ttgttaccacattttccacaatgcttctcgttactcctaggattcacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcc |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43246271 |
ttgttaccacattttccacaatgcttctcgttactcctaggattcacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcc |
43246370 |
T |
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| Q |
221 |
cacaattaaacatgtctatggaaaagttgacacaattgttgttgcagcaattagggcctggactacctttg |
291 |
Q |
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| T |
43246371 |
cacaattaaacatgtctatggaaaagttgacacaattgttgttgcagcaattagggcctggactacctttg |
43246441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 65 - 291
Target Start/End: Original strand, 8532633 - 8532859
Alignment:
| Q |
65 |
tcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcctaggatt |
164 |
Q |
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| T |
8532633 |
tcaaattctatgcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactcctagggtt |
8532732 |
T |
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| Q |
165 |
cacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcccacaattaaacatgtctatggaaaagttgacacaattgttgttg |
264 |
Q |
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| T |
8532733 |
cacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacatttgttgttg |
8532832 |
T |
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| Q |
265 |
cagcaattagggcctggactacctttg |
291 |
Q |
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| T |
8532833 |
caacaatcaggacctgcgctacctttg |
8532859 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 57 - 291
Target Start/End: Original strand, 8551391 - 8551625
Alignment:
| Q |
57 |
aatccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactc |
156 |
Q |
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||||||| | |||||||| ||||| |||||||||||||||||||| ||||||||| | |||||||||||||||||||| |||||||| |||| ||||||| |
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| T |
8551391 |
aatccatttgaaattctaggcatagctgcacattccataaacacaagaacctctactttcacacttgttaccacatttcccacaatgtttcttgttactc |
8551490 |
T |
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| Q |
157 |
ctaggattcacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcccacaattaaacatgtctatggaaaagttgacacaat |
256 |
Q |
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||||| |||||||||||||||||||| ||||||||||| || || ||||||||||||||||||||||| |||||||||||||||| ||| |||||||| | |
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| T |
8551491 |
ctagggttcacacatttaccttcacagcatatctttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaaattgacacatt |
8551590 |
T |
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| Q |
257 |
tgttgttgcagcaattagggcctggactacctttg |
291 |
Q |
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|||||||||| |||| ||| |||| ||||||||| |
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| T |
8551591 |
tgttgttgcaacaatcaggacctgcgctacctttg |
8551625 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 58 - 290
Target Start/End: Original strand, 8540896 - 8541128
Alignment:
| Q |
58 |
atccatatcaaattctacgcatatctgcacattccataaacacatgaacctctattgtcacacttgttaccacattttccacaatgcttctcgttactcc |
157 |
Q |
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|||||| | |||||||| ||||| |||||||| ||||||||||| |||||| || |||||||||||||||||||||| ||||||||||||| |||||||| |
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| T |
8540896 |
atccatttgaaattctaggcatagctgcacatcccataaacacaagaacctttactgtcacacttgttaccacatttcccacaatgcttcttgttactcc |
8540995 |
T |
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| Q |
158 |
taggattcacacatttaccttcacaacatatctttggaaagctacatttctttccacacctcccacaattaaacatgtctatggaaaagttgacacaatt |
257 |
Q |
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|||| |||||||||||||||||||| |||||| |||| || || ||||||||||||||||||||||| |||||||||||||||| |||||||||||| || |
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| T |
8540996 |
tagggttcacacatttaccttcacagcatatccttgggaaactgcatttctttccacacctcccacagttaaacatgtctatggtaaagttgacacattt |
8541095 |
T |
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| Q |
258 |
gttgttgcagcaattagggcctggactaccttt |
290 |
Q |
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||| |||||||||| ||| |||| |||||||| |
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| T |
8541096 |
gttcttgcagcaatcaggacctgcgctaccttt |
8541128 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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