View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_2 (Length: 614)
Name: NF17607_low_2
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 458; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 458; E-Value: 0
Query Start/End: Original strand, 1 - 539
Target Start/End: Complemental strand, 1673674 - 1673138
Alignment:
| Q |
1 |
tatagcgttcaactaaactaactaattgagtaactaattctaaccaatcctcttttaaaagaaaattctaactaacaatcaactaatacgaataaaatcc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1673674 |
tatagcgttcaactaaactaactaattgagtaactaattctaaccaatcctcttttaaaagaaaattctaactaacaatcaactaatacgaataaaatcc |
1673575 |
T |
|
| Q |
101 |
aactatcttaattgtgcttagggttggaaatgagtcgactcgaactcgtctgaaattaaaagtactcgataataattgatctagcttgaagctcaactta |
200 |
Q |
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|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| | |
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| T |
1673574 |
aactatcttaattgtgtttaggattggaaatgagtcgactcgaactcgtctgaaattaaaagtactcgataataattgatctagcttgaagcttaactca |
1673475 |
T |
|
| Q |
201 |
agttcaaaacaaacattttatttaactcgagtttgacttgtttaaatttcacgagcaattgcatttgactcgttatgatcataatacacattaatatctc |
300 |
Q |
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| || |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1673474 |
aatttaaaacaaacattttatttaactcgagtttgacttatttaaatttcacgagcaattgcatttgactcgttatgatcataatacacattaatatctc |
1673375 |
T |
|
| Q |
301 |
tttcatctttgattctacacctataaccaagtgctaacagtggagtagtgctccataatctctttcaagtgtagcttggattatgggtgagtttggcggc |
400 |
Q |
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| T |
1673374 |
tttcatctttgattctacacctataaccaagtgctaacaatggagtagtgctccataatctctttcaagtgtagcttggattatgggtgagtttggcggc |
1673275 |
T |
|
| Q |
401 |
caaaatatcattttaagggtaatattttactttcagaactctagtnnnnnnnttagaggaagagtttgtgagaaccttccatctttgtttgcccaatatg |
500 |
Q |
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| T |
1673274 |
caaaatatcattttaagggtaatattttactttgagaactctagtaaaaaa--taggggaagattttgtgagaaccttccatccttgtttgcccaatatg |
1673177 |
T |
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| Q |
501 |
gcaagggtaaacccttcgagatcccaaaagctcaagcca |
539 |
Q |
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| T |
1673176 |
gtaagggtaaacccttcgagatcccaaaagctcaagcca |
1673138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 207 - 277
Target Start/End: Complemental strand, 38836735 - 38836665
Alignment:
| Q |
207 |
aaacaaacattttatttaactcgagtttgacttgtttaaatttcacgagcaattgcatttgactcgttatg |
277 |
Q |
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| T |
38836735 |
aaacaaacattttatttagctcgagtttgagttgtttaaagttcatgaacaacttgatttgactcgttatg |
38836665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 213 - 275
Target Start/End: Complemental strand, 38838237 - 38838175
Alignment:
| Q |
213 |
acattttatttaactcgagtttgacttgtttaaatttcacgagcaattgcatttgactcgtta |
275 |
Q |
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| T |
38838237 |
acattttatttaacttgagttcggcttgtttaaatttcatgagcaactcaatttgtctcgtta |
38838175 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 2 - 40
Target Start/End: Original strand, 13965506 - 13965544
Alignment:
| Q |
2 |
atagcgttcaactaaactaactaattgagtaactaattc |
40 |
Q |
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|||| |||||||||||||||||||||||||||||||||| |
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| T |
13965506 |
atagggttcaactaaactaactaattgagtaactaattc |
13965544 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 118 - 153
Target Start/End: Original strand, 48633253 - 48633288
Alignment:
| Q |
118 |
ttagggttggaaatgagtcgactcgaactcgtctga |
153 |
Q |
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||||||||||||||||||||| |||||||||||||| |
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| T |
48633253 |
ttagggttggaaatgagtcgagtcgaactcgtctga |
48633288 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 3577033 - 3577078
Alignment:
| Q |
209 |
acaaacattttatttaactcgagtttgacttgtttaaatttcacga |
254 |
Q |
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||||||||||||||||||||||||| | || ||||||| ||||||| |
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| T |
3577033 |
acaaacattttatttaactcgagttcggctcgtttaaagttcacga |
3577078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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