View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17607_low_20 (Length: 292)
Name: NF17607_low_20
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_20 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 237; Significance: 1e-131; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 24 - 285
Target Start/End: Complemental strand, 49739931 - 49739670
Alignment:
| Q |
24 |
cttctcagatagtctagaaccatctaactacagttgaaatttgatatctattcatagttcaaacataattcaaggatgaatgattacaacttccaagtgt |
123 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49739931 |
cttctcagatagtctagaaccatctaactacagttgaaatttgatatctattcatagttcaaacataattcaaggatgaatgattacaacttccaagtgt |
49739832 |
T |
|
| Q |
124 |
taatttaattagtggatggtgtgtgatactttccatatacannnnnnncccttattcaaagagctcatgttgttccaaggtgcatttaatgtttaaacca |
223 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
49739831 |
taatttaattagtggatggtgtgtgatactttccatatacatttttttcccttattcaaagagcacatgttgttccaaggtgcatttaatgtttaaacca |
49739732 |
T |
|
| Q |
224 |
tatataaatcataaatggctagctttggtaatgagcatcttgttctgtaatatatattcttc |
285 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49739731 |
tatataaatcataaatggctagctttggtaatgagcatcttgttctgtaatatatattcttc |
49739670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University