View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17607_low_23 (Length: 284)

Name: NF17607_low_23
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17607_low_23
NF17607_low_23
[»] chr6 (19 HSPs)
chr6 (7-284)||(10578971-10579247)
chr6 (25-284)||(6596107-6596366)
chr6 (28-164)||(6423833-6423969)
chr6 (27-74)||(6436835-6436882)
chr6 (27-74)||(7993631-7993678)
chr6 (116-166)||(6395553-6395603)
chr6 (235-278)||(6423989-6424032)
chr6 (29-72)||(6432759-6432802)
chr6 (116-166)||(6410711-6410761)
chr6 (29-81)||(9412050-9412102)
chr6 (27-67)||(19633024-19633064)
chr6 (32-71)||(6410627-6410666)
chr6 (29-155)||(7132234-7132360)
chr6 (29-155)||(7138080-7138206)
chr6 (116-166)||(19633116-19633166)
chr6 (27-72)||(6403502-6403547)
chr6 (29-74)||(7135157-7135202)
chr6 (118-155)||(7135246-7135283)
chr6 (118-166)||(14809717-14809765)
[»] chr5 (1 HSPs)
chr5 (32-80)||(17205662-17205710)
[»] chr1 (3 HSPs)
chr1 (28-76)||(30827723-30827771)
chr1 (29-81)||(7555124-7555176)
chr1 (27-70)||(33161122-33161165)
[»] chr4 (2 HSPs)
chr4 (34-71)||(10633967-10634004)
chr4 (116-164)||(553775-553823)
[»] chr8 (1 HSPs)
chr8 (35-78)||(32151900-32151943)


Alignment Details
Target: chr6 (Bit Score: 234; Significance: 1e-129; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 7 - 284
Target Start/End: Complemental strand, 10579247 - 10578971
Alignment:
Q  7 gagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaa 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||||||||||    
T  10579247 gagaatagggcaactgagttcgaggttgagttctttgagcaatgggaaacaatcggcaacgagtaacaagtcatttttgtagagaaagtcagtagaacaa 10579148  T
Q  107 gtaaaacatgtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaagatgctttcgccggagagtgctagcgagttgagtttctcaa 206  Q
    || |||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  10579147 gtgaaacttgtcaaagttgttatgttttgggagaaagctcgtaacccatctgtgggaaagatgctttcgccggagagagctagcgagttgagtttctcaa 10579048  T
Q  207 acgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaacgggaaactagagattaagcgaaaaatgt 284  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||    
T  10579047 acgggaacttaggttcaccggagagaacgagcgatgtgagtttcttcaac-ggaaactagtgattaagcgaaaaatgt 10578971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 25 - 284
Target Start/End: Complemental strand, 6596366 - 6596107
Alignment:
Q  25 ttcgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagtt 124  Q
    ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || ||||   |||||||||| | | | |||||||||    
T  6596366 ttcgatgttgagttctttgagcaatgggaaacaatcagcaatgagtaacaagtcatttttgtagagaaagtttatagaacaagtgagagaggtcaaagtt 6596267  T
Q  125 gttatgttttgggagaaagcttgcaacccatctgtgggaaagatgctttcgccggagagtgctagcgagttgagtttctcaaacgggaacttaggttcac 224  Q
    |||||||||||||||||| || ||||||| || | ||||||||||||||||||||||||  | ||||| || ||||||| ||| |||||  ||||||| |    
T  6596266 gttatgttttgggagaaaactcgcaacccgtcagcgggaaagatgctttcgccggagagaacgagcgatttaagtttcttaaatgggaatctaggttcgc 6596167  T
Q  225 cggagagaacgagcgatgtgagtttcttcaacgggaaactagagattaagcgaaaaatgt 284  Q
    ||| || ||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  6596166 cggtgaaaacgagaaatgtgagtttcttcaacgggaaactagagattaagcgaaaaatgt 6596107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 28 - 164
Target Start/End: Original strand, 6423833 - 6423969
Alignment:
Q  28 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtt 127  Q
    |||||||||||||||||||||||||||||||| ||| |  ||||||| |||  | ||| | || ||     || ||||||| | | | ||||||||||||    
T  6423833 gaggttgagttctttgagcaatgggaaacaattggccacaagtaacaggtcggtgttggagagaaacatgctataacaagtgagagaggtcaaagttgtt 6423932  T
Q  128 atgttttgggagaaagcttgcaacccatctgtgggaa 164  Q
    |||||||||||||||||| ||||||||| ||||||||    
T  6423933 atgttttgggagaaagctcgcaacccatttgtgggaa 6423969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Original strand, 6436835 - 6436882
Alignment:
Q  27 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 74  Q
    |||||||||||| ||||||||| |||||||||||||||||||||||||    
T  6436835 cgaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaaca 6436882  T

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Target: chr6; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 27 - 74
Target Start/End: Complemental strand, 7993678 - 7993631
Alignment:
Q  27 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 74  Q
    |||||||||||||||||||||| |||||||||| ||||||||||||||    
T  7993678 cgaggttgagttctttgagcaaagggaaacaattggcaatgagtaaca 7993631  T

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Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 6395553 - 6395603
Alignment:
Q  116 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 166  Q
    ||||||||||| || |||||||||| |||||||||||||||||||||||||    
T  6395553 gtcaaagttgtaatattttgggagagagcttgcaacccatctgtgggaaag 6395603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 235 - 278
Target Start/End: Original strand, 6423989 - 6424032
Alignment:
Q  235 gagcgatgtgagtttcttcaacgggaaactagagattaagcgaa 278  Q
    |||||| |||||||||||||| ||||||||||||||||||||||    
T  6423989 gagcgacgtgagtttcttcaatgggaaactagagattaagcgaa 6424032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 72
Target Start/End: Original strand, 6432759 - 6432802
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 72  Q
    |||||||||| ||||||||| |||||||||||||||||||||||    
T  6432759 aggttgagttgtttgagcaaagggaaacaatcggcaatgagtaa 6432802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 6410711 - 6410761
Alignment:
Q  116 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 166  Q
    ||||||||||| ||||||||||||||| |||||||||||| | ||||||||    
T  6410711 gtcaaagttgtaatgttttgggagaaaacttgcaacccatttatgggaaag 6410761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 9412050 - 9412102
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 81  Q
    |||||||||||||  ||||| |||||||| || ||||||||||||||||||||    
T  9412050 aggttgagttcttcaagcaaagggaaacattcagcaatgagtaacaagtcatt 9412102  T

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Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 19633024 - 19633064
Alignment:
Q  27 cgaggttgagttctttgagcaatgggaaacaatcggcaatg 67  Q
    |||||||||||||||| | ||||||||||||||||||||||    
T  19633024 cgaggttgagttctttcaacaatgggaaacaatcggcaatg 19633064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 71
Target Start/End: Original strand, 6410627 - 6410666
Alignment:
Q  32 ttgagttctttgagcaatgggaaacaatcggcaatgagta 71  Q
    ||||||||||||||||||||||||||||| |||| |||||    
T  6410627 ttgagttctttgagcaatgggaaacaatcagcaaagagta 6410666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 7132234 - 7132360
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtta 128  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||  || || ||||| || ||     | ||||||   | | ||| ||||||||| |    
T  7132234 aggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacatgttggaacaatcgagagatgccaaagttgtaa 7132333  T
Q  129 tgttttgggagaaagcttgcaacccat 155  Q
    ||||||||||||||||| |||||||||    
T  7132334 tgttttgggagaaagctcgcaacccat 7132360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 155
Target Start/End: Original strand, 7138080 - 7138206
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatttttgtataggaagtcagtagaacaagtaaaacatgtcaaagttgtta 128  Q
    |||||||||||||| |||| ||| |||||||||||||| |||||||  || || ||||| || ||     | ||||||   | | ||| ||||||||| |    
T  7138080 aggttgagttctttaagcattggaaaacaatcggcaataagtaacagatcgttgttgtagagaaacgtgttggaacaatcgagagatgccaaagttgtaa 7138179  T
Q  129 tgttttgggagaaagcttgcaacccat 155  Q
    ||||||||||||||||| |||||||||    
T  7138180 tgttttgggagaaagctcgcaacccat 7138206  T

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Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 166
Target Start/End: Original strand, 19633116 - 19633166
Alignment:
Q  116 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 166  Q
    ||||||||||| ||| ||| |||||||||| ||||||||| ||||||||||    
T  19633116 gtcaaagttgtaatgctttcggagaaagctcgcaacccatttgtgggaaag 19633166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 72
Target Start/End: Original strand, 6403502 - 6403547
Alignment:
Q  27 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagtaa 72  Q
    |||||||||||| |||||||   |||||||||||||||||||||||    
T  6403502 cgaggttgagttgtttgagcttagggaaacaatcggcaatgagtaa 6403547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 74
Target Start/End: Original strand, 7135157 - 7135202
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaaca 74  Q
    ||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  7135157 aggttgagttctttgtgcattggaaaacaatcggcaataagtaaca 7135202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 155
Target Start/End: Original strand, 7135246 - 7135283
Alignment:
Q  118 caaagttgttatgttttgggagaaagcttgcaacccat 155  Q
    ||||||||| |||||||||||||||||| |||||||||    
T  7135246 caaagttgtaatgttttgggagaaagctcgcaacccat 7135283  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 118 - 166
Target Start/End: Original strand, 14809717 - 14809765
Alignment:
Q  118 caaagttgttatgttttgggagaaagcttgcaacccatctgtgggaaag 166  Q
    ||||||||| ||||||||||||||| |||||||||| | || |||||||    
T  14809717 caaagttgtaatgttttgggagaaatcttgcaacccttttgcgggaaag 14809765  T

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Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 32 - 80
Target Start/End: Original strand, 17205662 - 17205710
Alignment:
Q  32 ttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcat 80  Q
    ||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  17205662 ttgagttctttgagcaaagggaaacaatcggcaatgagtaacaggtcat 17205710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 28 - 76
Target Start/End: Original strand, 30827723 - 30827771
Alignment:
Q  28 gaggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaag 76  Q
    ||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  30827723 gaggttgagttgtttgagcaaagggaaacaatcggcaatgagtaacaag 30827771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 29 - 81
Target Start/End: Original strand, 7555124 - 7555176
Alignment:
Q  29 aggttgagttctttgagcaatgggaaacaatcggcaatgagtaacaagtcatt 81  Q
    ||||||||||||| |||||| |||||||| || ||||||||||||||||||||    
T  7555124 aggttgagttcttcgagcaaagggaaacattcagcaatgagtaacaagtcatt 7555176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 27 - 70
Target Start/End: Original strand, 33161122 - 33161165
Alignment:
Q  27 cgaggttgagttctttgagcaatgggaaacaatcggcaatgagt 70  Q
    |||||||||||| ||||||||| |||||||||||||||| ||||    
T  33161122 cgaggttgagttttttgagcaaagggaaacaatcggcaacgagt 33161165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 71
Target Start/End: Complemental strand, 10634004 - 10633967
Alignment:
Q  34 gagttctttgagcaatgggaaacaatcggcaatgagta 71  Q
    ||||||||||||||| ||||||||||||||||||||||    
T  10634004 gagttctttgagcaaagggaaacaatcggcaatgagta 10633967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 116 - 164
Target Start/End: Original strand, 553775 - 553823
Alignment:
Q  116 gtcaaagttgttatgttttgggagaaagcttgcaacccatctgtgggaa 164  Q
    ||||||||||| |||||||||||||||||| ||||||||| || |||||    
T  553775 gtcaaagttgtaatgttttgggagaaagctcgcaacccatttgcgggaa 553823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 35 - 78
Target Start/End: Original strand, 32151900 - 32151943
Alignment:
Q  35 agttctttgagcaatgggaaacaatcggcaatgagtaacaagtc 78  Q
    ||||||| |||||| |||||||||||||||||||| ||||||||    
T  32151900 agttcttcgagcaaagggaaacaatcggcaatgaggaacaagtc 32151943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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