View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17607_low_25 (Length: 264)
Name: NF17607_low_25
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_25 |
 | |
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| [»] chr4 (4 HSPs) |
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| [»] chr5 (8 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 27462112 - 27461859
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27462112 |
ggatcagagacacagcggctaagagcatttccacggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27462013 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttggaat |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
27462012 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaagcattgatgatgttggaat |
27461913 |
T |
|
| Q |
211 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27461912 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
27461859 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 27521321 - 27521576
Alignment:
| Q |
9 |
aaggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaaga |
108 |
Q |
| |
|
|||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27521321 |
aaggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaaga |
27521420 |
T |
|
| Q |
109 |
atgcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttgga |
208 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| |
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| T |
27521421 |
atgcttcttggatgatggttggtgggcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaagcattgatgatgttgga |
27521520 |
T |
|
| Q |
209 |
ataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27521521 |
ataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
27521576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 27482251 - 27481998
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
27482251 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaattgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
27482152 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttggaat |
210 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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|
| T |
27482151 |
gcttcttggatgatggttggtgataagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagtgtgatgatgaggcattgatgatgttggaat |
27482052 |
T |
|
| Q |
211 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27482051 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
27481998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 18986212 - 18985962
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||||||||||||||||||||| || || ||||||| ||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18986212 |
ggatcagagacacagcggctaagagtattcccacggagactgaaagaaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
18986113 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttggaat |
210 |
Q |
| |
|
||||||||||||| |||||||||| |||||||||||||||||||| | ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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|
| T |
18986112 |
gcttcttggatgacggttggtgagcagatgatgatgatggtgaacagagtttgacagtgttgttgtgagggtgatgatgaagcattgatgatgttggaat |
18986013 |
T |
|
| Q |
211 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
18986012 |
aatcatggattgtttctgtttgtgagggatcaccatggattcttgttgaat |
18985962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 218; Significance: 1e-120; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 264
Target Start/End: Complemental strand, 1758260 - 1758007
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1758260 |
ggatcagagacacagcggctaagagcattcccgcggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcaaaagaat |
1758161 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttggaat |
210 |
Q |
| |
|
|||||||| |||||||||||||| |||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758160 |
gcttcttgagtgatggttggtgagcagatgatgatgatggtgaacggcgtttgacagagtttttgtgagagtgatgatgaagcattgatgatgttggaat |
1758061 |
T |
|
| Q |
211 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1758060 |
aatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
1758007 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 11 - 264
Target Start/End: Original strand, 29568357 - 29568619
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29568357 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
29568456 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagag---------tgatgatgaagcattgatga |
201 |
Q |
| |
|
|||||||||||||| ||||||||| ||| ||||||||||||||| ||||||||| || ||| ||||||| | |||||||||||||||||||| |
|
|
| T |
29568457 |
gcttcttggatgatagttggtgagcagaagatgatgatggtgaatggcgtttgaaagagtttttgtgagtgtgatgatgatgatgatgaagcattgatga |
29568556 |
T |
|
| Q |
202 |
tgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29568557 |
tgttggaataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaatctg |
29568619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 29168367 - 29168141
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||| ||||||||| || || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29168367 |
ggatcagagacacagcagctaagagcattcccacggagactgaaaggaagtgtaatggtggagaagccattacgggtgagattgcttgcgttgaaagaat |
29168268 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagag---tgatgatgaagcattgatgatgttgg |
207 |
Q |
| |
|
|||| ||||||||| ||||||||| ||| ||||||||||||||||| |||||||||| ||||||||||| | |||||||||||||||||||||||||| |
|
|
| T |
29168267 |
gcttattggatgatagttggtgagcagaagatgatgatggtgaacgacgtttgacagagttgttgtgagtgtgatgatgatgaagcattgatgatgttgg |
29168168 |
T |
|
| Q |
208 |
aataatcatggattgtttctgtttgtg |
234 |
Q |
| |
|
|||||||||| ||||||||||||||| |
|
|
| T |
29168167 |
aataatcatgctttgtttctgtttgtg |
29168141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 31 - 264
Target Start/End: Original strand, 29569708 - 29569927
Alignment:
| Q |
31 |
aagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
130 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
29569708 |
aagagcattgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcggaagaatgcttcttggatgatagttgg |
29569807 |
T |
|
| Q |
131 |
tgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatgaagcattgatgatgttggaataatcatggattgtttctgtt |
230 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||||||||||| | |||||||||||||||||||||||||||||| |||| |
|
|
| T |
29569808 |
tgagcagatgatgatgatggtgaacggcgtttgacagagttgttgtgagtg--------------tgatgatgttggaataatcatggattgtttgtgtt |
29569893 |
T |
|
| Q |
231 |
tgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
||||||||||||| |||||||||||||||||||| |
|
|
| T |
29569894 |
tgtgagggatcaaaatggattcttgttgaatctg |
29569927 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 11 - 184
Target Start/End: Complemental strand, 29425408 - 29425232
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
|||||||||||||||||||||||||| || || ||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
29425408 |
ggatcagagacacagcggctaagagcattcccacggagactgaaaggaagtgtaatggcagagaagccattacgcatgagattgcttgcgtcaaaagaat |
29425309 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgat---ggtgaacggcgtttgacagtgttgttgtgagagtga |
184 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| |||| |
|
|
| T |
29425308 |
gcttcttggatgatggttggtgagcagatgatgatgatggtggtgaacggcgtttgacagagttgttgtgagtgtga |
29425232 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 31 - 190
Target Start/End: Complemental strand, 27918742 - 27918583
Alignment:
| Q |
31 |
aagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaatgcttcttggatgatggttgg |
130 |
Q |
| |
|
|||||| ||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |
|
|
| T |
27918742 |
aagagcgttgccacggagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgccagaagaatgcttcttggatgatagttgg |
27918643 |
T |
|
| Q |
131 |
tgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatga |
190 |
Q |
| |
|
|||| ||| |||||||||||||||| ||||||||||| ||||||||||| |||||||||| |
|
|
| T |
27918642 |
tgagcagaagatgatgatggtgaactgcgtttgacagagttgttgtgagtgtgatgatga |
27918583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 231 - 264
Target Start/End: Complemental strand, 29425236 - 29425203
Alignment:
| Q |
231 |
tgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
29425236 |
tgtgagggatcaacatggattcttgttgaatctg |
29425203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 228 - 264
Target Start/End: Complemental strand, 29166929 - 29166893
Alignment:
| Q |
228 |
gtttgtgagggatcaacatggattcttgttgaatctg |
264 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
29166929 |
gtttgtgagggatcatcatggattcttgttgaatctg |
29166893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 11 - 261
Target Start/End: Complemental strand, 25518596 - 25518343
Alignment:
| Q |
11 |
ggatcagagacacagcggctaagagccttgccgcggagaccgaaaggaagtgtaatggcagagaagccattacgggtgagattgcttgcgtcaaaagaat |
110 |
Q |
| |
|
||||||| |||||||| || |||||| || || || |||| |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25518596 |
ggatcagcgacacagcagcgaagagcattaccacgaagactgaaaggaagtgtaatggcggagaagccattacgggtgagattgcttgcgtcgaaagaat |
25518497 |
T |
|
| Q |
111 |
gcttcttggatgatggttggtgagaagatgatgatgatggtgaacggcgtttgacagtgttgttgtgagagtgatgatg---aagcattgatgatgttgg |
207 |
Q |
| |
|
|||||||||||||||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |||||||||||||||||| |
|
|
| T |
25518496 |
gcttcttggatgatggttggtgaggagaagatgatgatggtgaacggcgtttgacagagttgttgtgagtgtgatgatgaccaagcattgatgatgttgg |
25518397 |
T |
|
| Q |
208 |
aataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat |
261 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25518396 |
aataatcatggattgtttctgtttgtgagggatcaacatggattcttgttgaat |
25518343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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