View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17607_low_26 (Length: 255)
Name: NF17607_low_26
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_26 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 240; Significance: 1e-133; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 42236662 - 42236901
Alignment:
| Q |
1 |
tcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaagactactgcaccttgcatggcctcatttccattaaggaggcaattgccaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42236662 |
tcacctatgctttccccaaaagcagggtactcggcagaaacacgtaacaagactactgcaccttgcatggcctcatttccattaaggaggcaattgccaa |
42236761 |
T |
|
| Q |
101 |
agctaggactaggaagggtgagagctcaagctcaagctagtggtgataacaaagacaattctgtggaagttcaacatgttaacaaaggtgatcaaggtca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42236762 |
agctaggactaggaagggtgagagctcaagctcaagctagtggtgataacaaagacaattctgtggaagttcaacatgttaacaaaggtgatcaaggtca |
42236861 |
T |
|
| Q |
201 |
tggttccgctgtagagagaaagcctcgtagaggttccatg |
240 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42236862 |
tggttccgctgtagagagaaagcctcgtagaggttccatg |
42236901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University