View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17607_low_3 (Length: 557)

Name: NF17607_low_3
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17607_low_3
NF17607_low_3
[»] chr4 (2 HSPs)
chr4 (45-539)||(25014121-25014618)
chr4 (370-427)||(25015126-25015183)
[»] chr1 (2 HSPs)
chr1 (61-303)||(33068068-33068308)
chr1 (370-407)||(9915281-9915318)
[»] chr8 (3 HSPs)
chr8 (113-297)||(19955154-19955338)
chr8 (370-407)||(27542498-27542535)
chr8 (375-407)||(27543363-27543395)
[»] chr7 (3 HSPs)
chr7 (375-428)||(22707195-22707248)
chr7 (366-428)||(22689744-22689806)
chr7 (370-408)||(17833846-17833884)
[»] chr2 (1 HSPs)
chr2 (375-417)||(43230470-43230512)
[»] chr5 (1 HSPs)
chr5 (370-407)||(15025719-15025756)
[»] chr3 (1 HSPs)
chr3 (375-428)||(44902156-44902209)


Alignment Details
Target: chr4 (Bit Score: 430; Significance: 0; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 430; E-Value: 0
Query Start/End: Original strand, 45 - 539
Target Start/End: Original strand, 25014121 - 25014618
Alignment:
Q  45 caaacaacaatttgattagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactat 144  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  25014121 caaacaacaatttgattagatgtgtgtgattatgaaattca-tagaggatagtttgagtagacaatttttccttatgttcttaagtttccaagggactat 25014219  T
Q  145 ataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcact 244  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| |||||||||||    
T  25014220 ataaggagacttgaacgccaaacaagctattttagaatcactttcaatccataagtgattccaattcttcatatagtcagtttccacagcaatactcact 25014319  T
Q  245 cccatta----gctcagcaaagagagcatttgaaataccaagattgattgcaaaacaaccctttctgaatattccagcacaagcaaactgtcctggattt 340  Q
    |||||||    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  25014320 cccattaattagctcagcaaagagagcatttgaaataccaagattgattgcaaaacaaccctttctgaatattccagcacaagcaaactgccctggattt 25014419  T
Q  341 cctagagttctgtcatctgtattacatttaggggttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacatttttctctctatctaa 440  Q
    | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25014420 cttagagttgtgtcatctgtattacatttaggggttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacatttttctctctatctaa 25014519  T
Q  441 tcaatctttctagtccaattctctgtcatattaattagctttaaaatttcaccatcatctttgcaacacaattgttgtacaacaacaagtctaccatca 539  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||    
T  25014520 tcaacctttctagtccaattctctgtcatattaattagctttaaaatttcaccatcatcattgcaacacaattgctgtacaacaacaagtctaccatca 25014618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 370 - 427
Target Start/End: Complemental strand, 25015183 - 25015126
Alignment:
Q  370 aggggttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacatttt 427  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  25015183 agggtttttctaacctgtgcaatgttgcatagcttaagagtcatttaatgcacatttt 25015126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 61 - 303
Target Start/End: Original strand, 33068068 - 33068308
Alignment:
Q  61 tagatgtgtgtgattatgaaattcaatagaggatagtttgagtagacaatttttccatatgttcttaagtttccaagggactatataaggagacttgaac 160  Q
    |||||||||||||| |||||||||| || |||| ||||||| |||   |||||||||| ||||||||||||||||||| ||||||| |||||||||||||    
T  33068068 tagatgtgtgtgatcatgaaattca-tataggacagtttgactaggggatttttccatctgttcttaagtttccaaggcactatatgaggagacttgaac 33068166  T
Q  161 gccaaacaagctaatttagaatcactttcaatccataagtaattccaattcttcatataggcagtttccacaacaatactcactcccattagctcagcaa 260  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| | ||||||||||||||||||||||||||| || ||||||||||||||| |||||    
T  33068167 gccaagcaagctaatttagaatcactttcaatccataagtgattcga-ttcttcatataggcagtttccacaacagtaatcactcccattagcttagcaa 33068265  T
Q  261 agagagcatttgaaataccaagattgattgcaaaacaaccctt 303  Q
    |||||||||||||||| ||||||||||||||||||||||||||    
T  33068266 agagagcatttgaaattccaagattgattgcaaaacaaccctt 33068308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Complemental strand, 9915318 - 9915281
Alignment:
Q  370 aggggttttctaacctgtgcaatgttgcacagcttaag 407  Q
    |||| ||||||||||| |||||||||||||||||||||    
T  9915318 agggtttttctaacctttgcaatgttgcacagcttaag 9915281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 113 - 297
Target Start/End: Complemental strand, 19955338 - 19955154
Alignment:
Q  113 ttccatatgttcttaagtttccaagggactatataaggagacttgaacgccaaacaagctaatttagaatcactttcaatccataagtaattccaattct 212  Q
    |||||||| ||||| || |||||||| ||||| | | |||||||||| |||||   ||| || ||  ||||||||||||||||||||| |||| | || |    
T  19955338 ttccatatattcttgagcttccaaggaactatgtgatgagacttgaaggccaaggtagccaactttaaatcactttcaatccataagtgattctagtttt 19955239  T
Q  213 tcatataggcagtttccacaacaatactcactcccattagctcagcaaagagagcatttgaaataccaagattgattgcaaaaca 297  Q
    |   ||| ||| |||||| ||| | | |||||||| || |||||| ||| || ||||||||||| || |||||||||||||||||    
T  19955238 tgtcataagcaatttccaaaactaaaatcactccctttggctcaggaaaaagggcatttgaaattcctagattgattgcaaaaca 19955154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 27542498 - 27542535
Alignment:
Q  370 aggggttttctaacctgtgcaatgttgcacagcttaag 407  Q
    |||| |||||||||||||||||||||||||||||||||    
T  27542498 agggtttttctaacctgtgcaatgttgcacagcttaag 27542535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 375 - 407
Target Start/End: Complemental strand, 27543395 - 27543363
Alignment:
Q  375 ttttctaacctgtgcaatgttgcacagcttaag 407  Q
    ||||||||| |||||||||||||||||||||||    
T  27543395 ttttctaacatgtgcaatgttgcacagcttaag 27543363  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 22707195 - 22707248
Alignment:
Q  375 ttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacattttt 428  Q
    |||||||||||||||||||||||||||||||||  | | |||||||||||||||    
T  22707195 ttttctaacctgtgcaatgttgcacagcttaagccttaattaatgcacattttt 22707248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 366 - 428
Target Start/End: Complemental strand, 22689806 - 22689744
Alignment:
Q  366 atttaggggttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacattttt 428  Q
    |||||||| ||||||||| |||||||||||||||||  ||||| ||| ||||||||| |||||    
T  22689806 atttagggtttttctaacatgtgcaatgttgcacaggataagaatcaattaatgcactttttt 22689744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 370 - 408
Target Start/End: Complemental strand, 17833884 - 17833846
Alignment:
Q  370 aggggttttctaacctgtgcaatgttgcacagcttaaga 408  Q
    |||| ||||||||| ||||||||||||||||||||||||    
T  17833884 agggattttctaacatgtgcaatgttgcacagcttaaga 17833846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 375 - 417
Target Start/End: Original strand, 43230470 - 43230512
Alignment:
Q  375 ttttctaacctgtgcaatgttgcacagcttaagagtcatttaa 417  Q
    ||||||||| ||| ||||||||||||| |||||||||||||||    
T  43230470 ttttctaacatgtacaatgttgcacagtttaagagtcatttaa 43230512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 370 - 407
Target Start/End: Original strand, 15025719 - 15025756
Alignment:
Q  370 aggggttttctaacctgtgcaatgttgcacagcttaag 407  Q
    |||| |||||||||||||||||| ||||||||||||||    
T  15025719 agggtttttctaacctgtgcaatcttgcacagcttaag 15025756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 428
Target Start/End: Original strand, 44902156 - 44902209
Alignment:
Q  375 ttttctaacctgtgcaatgttgcacagcttaagagtcatttaatgcacattttt 428  Q
    |||||||||||||||||  |||||||||||||||  || ||||||||| |||||    
T  44902156 ttttctaacctgtgcaacattgcacagcttaagaagcagttaatgcactttttt 44902209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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