View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_30 (Length: 250)
Name: NF17607_low_30
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_30 |
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Alignment Details
Target: chr6 (Bit Score: 138; Significance: 3e-72; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 138; E-Value: 3e-72
Query Start/End: Original strand, 1 - 182
Target Start/End: Complemental strand, 10578844 - 10578656
Alignment:
| Q |
1 |
tgttggttacggagaggaattgtttggagacgagagatagagaattcaaatagtaaccaccgttttccttaaccaagaatttcaaaatatattcccaaca |
100 |
Q |
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| T |
10578844 |
tgttggttatggagaggaattgtttggagacgagagatagagaattcaaatagtaaccaccgttttccttaacgaagtatttcaaaatatattcccaaca |
10578745 |
T |
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| Q |
101 |
gtcatcaggtaaattctcaaccattttcttccttttcatggtgagagct----ccgcaaatagaagaaga---tatgagaaagcgtttc |
182 |
Q |
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| T |
10578744 |
gtcatcaggtaaattctcaaccattttctttcttttcatggtgagagcgagcgccgcaaatagaagaagaagatatgagaaagcgtttc |
10578656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Original strand, 6424154 - 6424202
Alignment:
| Q |
2 |
gttggttacggagaggaattgtttggagacgagagatagagaattcaaa |
50 |
Q |
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| T |
6424154 |
gttggttacggagaggaactgtttggagacgagggaaagagaattcaaa |
6424202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 11 - 54
Target Start/End: Complemental strand, 7993341 - 7993298
Alignment:
| Q |
11 |
ggagaggaattgtttggagacgagagatagagaattcaaatagt |
54 |
Q |
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| T |
7993341 |
ggagaggaactgtttggagacgagagataaagaattcaagtagt |
7993298 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 3 - 49
Target Start/End: Original strand, 19633362 - 19633408
Alignment:
| Q |
3 |
ttggttacggagaggaattgtttggagacgagagatagagaattcaa |
49 |
Q |
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| T |
19633362 |
ttggttattgagaggaactgtttggagacgagggatagagaattcaa |
19633408 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 2 - 43
Target Start/End: Complemental strand, 6602529 - 6602488
Alignment:
| Q |
2 |
gttggttacggagaggaattgtttggagacgagagatagaga |
43 |
Q |
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| T |
6602529 |
gttggtgacggagaggaaatgtttggagacgagggatagaga |
6602488 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10168855 - 10168807
Alignment:
| Q |
1 |
tgttggttacggagaggaattgtttggagacgagagatagagaattcaa |
49 |
Q |
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| T |
10168855 |
tgttggtgatggagaggaactgtttggagacaagggatagagaattcaa |
10168807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 10176380 - 10176332
Alignment:
| Q |
1 |
tgttggttacggagaggaattgtttggagacgagagatagagaattcaa |
49 |
Q |
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| T |
10176380 |
tgttggtgatggagaggaactgtttggagacaagggatagagaattcaa |
10176332 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 49
Target Start/End: Complemental strand, 15091398 - 15091350
Alignment:
| Q |
1 |
tgttggttacggagaggaattgtttggagacgagagatagagaattcaa |
49 |
Q |
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| T |
15091398 |
tgttggtgatggagaggaactgtttggagacgagggagagagaattcaa |
15091350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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