View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17607_low_31 (Length: 249)
Name: NF17607_low_31
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_31 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 18 - 236
Target Start/End: Complemental strand, 26019204 - 26018986
Alignment:
| Q |
18 |
attataacacacaggatgtccctttctatcaaacccatgagtgaaagcaacaacaccttcaagctctttgaatcccaaatcttcatccacaacattttca |
117 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019204 |
attataacacacaggatgtccctctctatcaaacccatgagtgaaagcaacaacaccttcaagctctttgaatcccaaatcttcatccacaacattttca |
26019105 |
T |
|
| Q |
118 |
gcaccaaattcttttctccaagaaagacacttcacaagcatagtgtaagcatcattgactctaaagtctctagctctaagaaacttcaagagtaacacat |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
26019104 |
gcaccaaattcttttctccaagaaagacacttcacaagcatagtgtaagcatcattgactctaaagtctctagctctaagaaacttcaagagtaacacat |
26019005 |
T |
|
| Q |
218 |
cagcaacatcatcaccttt |
236 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
26019004 |
cagcaacatcatcaccttt |
26018986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University