View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_32 (Length: 237)
Name: NF17607_low_32
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 137; Significance: 1e-71; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 67 - 215
Target Start/End: Original strand, 54303860 - 54304008
Alignment:
| Q |
67 |
ttggattaatatcaagggctaaagaactaatagccatcattcgagacgcagggtctatcactagtacaatggagtttgttgagaatatatatagggtcag |
166 |
Q |
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| T |
54303860 |
ttggattaatatcaagggctaaagaactaatagccatcattcgagacgcagggtctatcactagtacaacggagtttgttgagaatatatatagggtcag |
54303959 |
T |
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| Q |
167 |
aggatcaacagaattcaaggctgttattgtccgaattgacagttcagga |
215 |
Q |
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| T |
54303960 |
agcatcaacagaattcaaggttgttattgtccgaattgacagttcagga |
54304008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 63
Target Start/End: Complemental strand, 54302970 - 54302908
Alignment:
| Q |
1 |
acatttttctgtaaatgttacggaagcagcaggaagtcatgattgtcatgtataaagtggcga |
63 |
Q |
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| T |
54302970 |
acatttttctgtaaatgttacggaagcagcaggaagtcatgattgtcatatataaagtggcga |
54302908 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 74 - 121
Target Start/End: Complemental strand, 56209186 - 56209139
Alignment:
| Q |
74 |
aatatcaagggctaaagaactaatagccatcattcgagacgcagggtc |
121 |
Q |
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| T |
56209186 |
aatatcaaagggtaaagaactaatagccatcattcgagcctcagggtc |
56209139 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 215
Target Start/End: Original strand, 10520907 - 10520951
Alignment:
| Q |
171 |
tcaacagaattcaaggctgttattgtccgaattgacagttcagga |
215 |
Q |
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| T |
10520907 |
tcaaaagaaatcaaggctgttattatccgaattgacagtacagga |
10520951 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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