View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17607_low_34 (Length: 204)
Name: NF17607_low_34
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_34 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 152; Significance: 1e-80; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 19 - 193
Target Start/End: Original strand, 29250662 - 29250837
Alignment:
| Q |
19 |
tcaattacggctacccttagagctaacgggattatgggtaatattcatattcgtgcttatggcgattttaattcttctcac-tcgacaaagaggctctta |
117 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
29250662 |
tcaattacggctgcccttagagctaacgggattatgggtaatattcatattcgtgcttatggcgattttaattcttctgaggtcgacaaagaggctctta |
29250761 |
T |
|
| Q |
118 |
attcaacaaacatttctctacacggatccattaccgaattaaataccggtgagttttccttacccttcatattctt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
29250762 |
attcaacaaacatttctctacacggatccattaccgaattaaataccggtgagttttccttacccttcattttctt |
29250837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 58; Significance: 1e-24; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 74 - 154
Target Start/End: Complemental strand, 41783177 - 41783096
Alignment:
| Q |
74 |
cttatggcgattttaattcttctcac-tcgacaaagaggctcttaattcaacaaacatttctctacacggatccattaccga |
154 |
Q |
| |
|
||||||||||||||||||||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
41783177 |
cttatggcgattttaattcttctgaggtcgacaaagaggctcttaattcaaccaacttttctctacacggatccattaccga |
41783096 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 119
Target Start/End: Original strand, 53729756 - 53729857
Alignment:
| Q |
19 |
tcaattacggctacccttagagctaacgggattatgggtaatattcatattcgtgcttatggcgattttaattcttctca-ctcgacaaagaggctctta |
117 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| | ||| ||| || | |||||||||||||||||||||| | |||||||||||||||||| |
|
|
| T |
53729756 |
tcaattacggcagcccttagagctaacggaattatgggcagaattagtatccgcgtttatggcgattttaattcttctgaggtcgacaaagaggctctta |
53729855 |
T |
|
| Q |
118 |
at |
119 |
Q |
| |
|
|| |
|
|
| T |
53729856 |
at |
53729857 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 154 - 193
Target Start/End: Complemental strand, 41783075 - 41783036
Alignment:
| Q |
154 |
aattaaataccggtgagttttccttacccttcatattctt |
193 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
41783075 |
aattaaataccggtgagttttccttacccttcattttctt |
41783036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 80
Target Start/End: Complemental strand, 40918462 - 40918401
Alignment:
| Q |
19 |
tcaattacggctacccttagagctaacgggattatgggtaatattcatattcgtgcttatgg |
80 |
Q |
| |
|
||||||||||| || |||||||||||||||||||||||| |||| |||||| |||||||| |
|
|
| T |
40918462 |
tcaattacggcagccgttagagctaacgggattatgggtacaattcgtattcgcgcttatgg |
40918401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 40918392 - 40918352
Alignment:
| Q |
100 |
tcgacaaagaggctcttaattcaacaaacatttctctacac |
140 |
Q |
| |
|
||||||||||||||||||||||||| |||||| |||||||| |
|
|
| T |
40918392 |
tcgacaaagaggctcttaattcaaccaacattactctacac |
40918352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 80
Target Start/End: Original strand, 2883094 - 2883155
Alignment:
| Q |
19 |
tcaattacggctacccttagagctaacgggattatgggtaatattcatattcgtgcttatgg |
80 |
Q |
| |
|
||||||||||| || ||||||||||||| |||||||||| |||||||||| |||||||| |
|
|
| T |
2883094 |
tcaattacggcagccgttagagctaacggaattatgggtacaattcatattcacgcttatgg |
2883155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Original strand, 2883161 - 2883201
Alignment:
| Q |
100 |
tcgacaaagaggctcttaattcaacaaacatttctctacac |
140 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
2883161 |
tcgacaaagaggcttttaattcaaccaacattactctacac |
2883201 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 140
Target Start/End: Complemental strand, 3151400 - 3151360
Alignment:
| Q |
100 |
tcgacaaagaggctcttaattcaacaaacatttctctacac |
140 |
Q |
| |
|
|||||||||||||| |||||||||| |||||| |||||||| |
|
|
| T |
3151400 |
tcgacaaagaggcttttaattcaaccaacattactctacac |
3151360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University