View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17607_low_5 (Length: 497)
Name: NF17607_low_5
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17607_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 133 - 490
Target Start/End: Original strand, 29485635 - 29485992
Alignment:
| Q |
133 |
catgttattggtagttgtgtggctaaaaaataatcaatctatatctatatagtagtaaatgttgtctgttaggccaaagcatataccatgtttctgattg |
232 |
Q |
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| T |
29485635 |
catgttattggtagttgtgtggctaaaaaataatcaatctatatccatatagtagtaaatgttgtctgttaggccaaagcatataccatgtttctgattg |
29485734 |
T |
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| Q |
233 |
tcgggctccttatttttagtttaggtatagaaaataccatgttactgatcattgtaccaataaaatatgctggaaaaagaaaaagaatgaagattaacag |
332 |
Q |
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| T |
29485735 |
tcgggctccttatttttagtttaggtatagaaaataccatgttattgatcattgtaccaataaaatatgctggaaaaagaagaagaatgaagattaacag |
29485834 |
T |
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| Q |
333 |
tgtaactgaatccaaatatgaatccaagccagacaaataatcttctactattagacaaaatttatttattaatcttcaccaactcccaaaacaaaaaatt |
432 |
Q |
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| T |
29485835 |
tgtaactgaatccaaatatgaatccaagccagacaaataatcttctactattagacaaaatttatttattaatcttcaccaactcccaaaacaaaaaatt |
29485934 |
T |
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| Q |
433 |
aatacaagctcaaagcttaatggaccgaaattgaagctcccatgctgaatgatgatgt |
490 |
Q |
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| T |
29485935 |
aatacaagctcaaagcttaatggaccgaaattgaagctcccatgctgactgatgatgt |
29485992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 23 - 143
Target Start/End: Original strand, 29485498 - 29485618
Alignment:
| Q |
23 |
taaaaatttagggttggaccgtccctttgtcactgtgctcccaacaatttcaaccactaataattttaattgaattaaattattttactcttaatacatt |
122 |
Q |
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| T |
29485498 |
taaaattttagggttggaccgtccctttgtcactgtgctcccaacaatttcaaccactaattattttaattgaattaaattattttactcttaacacatt |
29485597 |
T |
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| Q |
123 |
tgaagtacatcatgttattgg |
143 |
Q |
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| T |
29485598 |
agaagtacatcatgttattgg |
29485618 |
T |
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Back To:
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