View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17607_low_6 (Length: 488)

Name: NF17607_low_6
Description: NF17607
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17607_low_6
NF17607_low_6
[»] chr5 (6 HSPs)
chr5 (1-432)||(14148187-14148611)
chr5 (424-474)||(14149436-14149486)
chr5 (89-168)||(19366759-19366840)
chr5 (90-165)||(26440117-26440194)
chr5 (166-202)||(7313281-7313317)
chr5 (103-169)||(932144-932212)
[»] chr8 (7 HSPs)
chr8 (81-238)||(27924450-27924601)
chr8 (75-137)||(5323815-5323877)
chr8 (89-164)||(33986892-33986969)
chr8 (90-169)||(13015378-13015459)
chr8 (166-204)||(44362291-44362329)
chr8 (169-210)||(6510002-6510043)
chr8 (90-168)||(37940474-37940554)
[»] chr3 (10 HSPs)
chr3 (74-168)||(29793456-29793552)
chr3 (74-204)||(50662416-50662541)
chr3 (74-168)||(40892824-40892920)
chr3 (89-164)||(277571-277648)
chr3 (78-169)||(38832985-38833080)
chr3 (96-165)||(31977223-31977296)
chr3 (166-233)||(31064596-31064662)
chr3 (167-209)||(51490237-51490279)
chr3 (89-169)||(53653143-53653224)
chr3 (166-206)||(49980313-49980353)
[»] chr6 (2 HSPs)
chr6 (89-164)||(31330554-31330631)
chr6 (104-164)||(9245959-9246021)
[»] chr2 (7 HSPs)
chr2 (89-204)||(45716450-45716560)
chr2 (89-168)||(8329681-8329762)
chr2 (81-154)||(20493608-20493682)
chr2 (89-165)||(6599346-6599425)
chr2 (71-168)||(25749700-25749799)
chr2 (166-204)||(29108801-29108839)
chr2 (89-168)||(33635722-33635803)
[»] chr4 (8 HSPs)
chr4 (89-169)||(48743494-48743576)
chr4 (89-204)||(36860295-36860403)
chr4 (89-169)||(36619881-36619963)
chr4 (166-206)||(26194538-26194578)
chr4 (89-164)||(21139269-21139346)
chr4 (89-210)||(47742744-47742860)
chr4 (90-168)||(12763380-12763460)
chr4 (103-168)||(53374961-53375028)
[»] chr1 (6 HSPs)
chr1 (89-168)||(26127291-26127372)
chr1 (74-168)||(35538985-35539081)
chr1 (103-169)||(15822696-15822764)
chr1 (102-164)||(1411562-1411625)
chr1 (166-209)||(43638416-43638459)
chr1 (89-164)||(14171849-14171926)
[»] scaffold0257 (1 HSPs)
scaffold0257 (104-164)||(18858-18922)
[»] scaffold0191 (1 HSPs)
scaffold0191 (89-169)||(4571-4653)
[»] chr7 (5 HSPs)
chr7 (89-168)||(6221049-6221129)
chr7 (104-239)||(30898064-30898194)
chr7 (91-168)||(45879143-45879222)
chr7 (166-233)||(34224344-34224411)
chr7 (166-206)||(24495339-24495379)
[»] scaffold0009 (1 HSPs)
scaffold0009 (167-204)||(140335-140372)


Alignment Details
Target: chr5 (Bit Score: 346; Significance: 0; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 432
Target Start/End: Original strand, 14148187 - 14148611
Alignment:
Q  1 tgatatcatataaaagtgtatagtgtatggtgtttgaattaatataagagttttgttaatcagtgttcttagagcattaattaaggtgctaaaaatagaa 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||||||||||| |||||||||||    
T  14148187 tgatatcatataaaagtgtatagtgtatggtgtttgaattaatatatgagttttgttaaccagtgtttttagagcattaattaaggtgttaaaaatagaa 14148286  T
Q  101 tgaaaagtcaaattttgaattaaaaagaacattttttactttcaaaaagtagaatgcacaatttccaattttcaagataatatttctttttataattcct 200  Q
     |||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||||||||||       |||||||| ||||||||||||||||    
T  14148287 agaaaagtcaaattttgaattaaaaagaatatttttaactttcaaaaagtagaatacacaatttccaa-------gataatatgtctttttataattcct 14148379  T
Q  201 taacaaatgttcaggatgcactcgttaacattttccttaatataaaagtatcaataagggaagaatctagaatttgaacttcgacctctacatatttcca 300  Q
    |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||    
T  14148380 taacaaatgtcctggatgcactcgttaacattttccttaatataaaagtatcaataagggaagaatctagaatttgaacttggacctctacatgtttcca 14148479  T
Q  301 taattgagtaggctcacgaggagaatttacactactagataactcatttttgtatgaatattttgtaacataaattattttaccgtaaatataactttta 400  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14148480 taattgagtaggctgacgaggacaatttacactactagataactcatttttgtatgaatattttgtaacataaattattttaccgtaaatataactttta 14148579  T
Q  401 ctaaagttaattcgacaaaaatcaatataatc 432  Q
    ||||||||||||||||||||||||||||||||    
T  14148580 ctaaagttaattcgacaaaaatcaatataatc 14148611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 424 - 474
Target Start/End: Original strand, 14149436 - 14149486
Alignment:
Q  424 aatataatcctaatcaattttcgccataaaataaaccaaacacatgtaagt 474  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14149436 aatataatcctaatcaattttcgccataaaataaaccaaacacatgtaagt 14149486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 19366759 - 19366840
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||| ||||| |||||||||| |||||||| |||  |||||  |||||||||||||||||| ||||||||||||    
T  19366759 ctaaaagtagaaagaaaaatcaaattttgcattaaaaaaaactctttttcaactttcaaaaagtagaatacacaatttccaa 19366840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 90 - 165
Target Start/End: Complemental strand, 26440194 - 26440117
Alignment:
Q  90 taaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttc 165  Q
    ||||| ||||| |||||||||||||||| |||||||| ||||  ||||| ||||| |||||||||||| |||||||||    
T  26440194 taaaagtagaaagaaaagtcaaattttgcattaaaaataacacttttttaacttttaaaaagtagaatacacaatttc 26440117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 7313281 - 7313317
Alignment:
Q  166 caattttcaagataatatttctttttataattcctta 202  Q
    |||||||||||| ||||||||||||||||||||||||    
T  7313281 caattttcaagaaaatatttctttttataattcctta 7313317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 932212 - 932144
Alignment:
Q  103 aaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaat 169  Q
    |||| |||| ||||| ||| |||||||||||||||  ||||| |||||||| ||| |||||||||||||    
T  932212 aaaaatcaagttttgcattgaaaagaacatttttttaactttaaaaaagtaaaatacacaatttccaat 932144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 3e-21; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 81 - 238
Target Start/End: Complemental strand, 27924601 - 27924450
Alignment:
Q  81 ttaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttccaattttcaagat 178  Q
    |||||||||||||| || || ||||||||||||||| |||||||| |||||  ||||| |||||||||||||||||| ||        ||||||||||||    
T  27924601 ttaaggtgctaaaagtataaagaaaagtcaaattttaaattaaaatgaacacttttttaactttcaaaaagtagaataca-------taattttcaagat 27924509  T
Q  179 aatatttctttttataattccttaacaaatg-ttcaggatgcactcgttaacattttcctt 238  Q
    |||||||  |||| |||||| |||||||||| ||| ||  |||||||||||||||||||||    
T  27924508 aatattttcttttctaattctttaacaaatgcttcggg--gcactcgttaacattttcctt 27924450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 75 - 137
Target Start/End: Complemental strand, 5323877 - 5323815
Alignment:
Q  75 cattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt 137  Q
    ||||| |||||||||||||| ||||| |||||||||||||||  ||||||||||||| |||||    
T  5323877 cattagttaaggtgctaaaattagaaagaaaagtcaaattttacattaaaaagaacacttttt 5323815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 33986969 - 33986892
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaattt 164  Q
    |||||| ||||| ||||||| |||||||| |||||||||||||   |||| |||||||||||||| ||| ||||||||    
T  33986969 ctaaaagtagaaagaaaagtaaaattttgcattaaaaagaacactattttaactttcaaaaagtaaaatacacaattt 33986892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 90 - 169
Target Start/End: Original strand, 13015378 - 13015459
Alignment:
Q  90 taaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaat 169  Q
    ||||| ||||| ||||||| || ||||| |||||||| |||| |||||  | |||||||||||||||| |||||||| ||||    
T  13015378 taaaagtagaaagaaaagttaagttttgcattaaaaacaacacttttttaattttcaaaaagtagaatacacaatttgcaat 13015459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Complemental strand, 44362329 - 44362291
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaac 204  Q
    |||||||||| | ||||||||||||||||||||||||||    
T  44362329 caattttcaatacaatatttctttttataattccttaac 44362291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 169 - 210
Target Start/End: Original strand, 6510002 - 6510043
Alignment:
Q  169 ttttcaagataatatttctttttataattccttaacaaatgt 210  Q
    |||| |||| |||||||| |||||||||||||||||||||||    
T  6510002 tttttaagacaatatttcattttataattccttaacaaatgt 6510043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 90 - 168
Target Start/End: Complemental strand, 37940554 - 37940474
Alignment:
Q  90 taaaaatagaatgaaaagtcaaattttgaattaaaaagaaca-ttttttact-ttcaaaaagtagaatgcacaatttccaa 168  Q
    ||||| ||||| ||||| |||||||||  |||||||| |||| ||||||| | || |||||||||||| ||||||||||||    
T  37940554 taaaagtagaaagaaaaatcaaattttatattaaaaaaaacacttttttaatatttaaaaagtagaatacacaatttccaa 37940474  T

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Target: chr3 (Bit Score: 50; Significance: 2e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 29793552 - 29793456
Alignment:
Q  74 gcattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||||||||||||||| || |||||||||||||||  |||||||||||||  ||||| ||||| |||||||| ||| ||||||||||||    
T  29793552 gcattagttaaggtgctaaaaataaaaagaaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaagtaaaatacacaatttccaa 29793456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 74 - 204
Target Start/End: Original strand, 50662416 - 50662541
Alignment:
Q  74 gcattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaattt 171  Q
    |||||| ||||||  |||||| || ||  ||||||||||||||| ||| |||||||||||||||  ||||||||||||||||||  | ||||||||||      
T  50662416 gcattagttaaggaactaaaagtataaataaaagtcaaattttgtattgaaaagaacatttttttgactttcaaaaagtagaatagaaaatttccaat-- 50662513  T
Q  172 tcaagataatatttctttttataattccttaac 204  Q
         |||||||||  |||||||||||||||||    
T  50662514 -----ataatattttattttataattccttaac 50662541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 40892920 - 40892824
Alignment:
Q  74 gcattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||||  |||||| ||||| | |||||||| ||||| ||| ||||||||| ||| |  |||||||||||||||||| ||||||||||||    
T  40892920 gcattagttaaggaactaaaagtagaaaggaaagtcaagttttgcattgaaaagaacactttattaactttcaaaaagtagaatacacaatttccaa 40892824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 277648 - 277571
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaattt 164  Q
    ||||||| |||| ||||||| |||||||| ||||||||||||| ||| |  ||||||||||| || ||||||||||||    
T  277648 ctaaaaacagaaagaaaagtaaaattttgtattaaaaagaacactttctcaactttcaaaaactataatgcacaattt 277571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 38833080 - 38832985
Alignment:
Q  78 taattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacat----tttttactttcaaaaagtagaatgcacaatttccaat 169  Q
    |||||||||  ||||||||| || ||||||| |||||||| ||| ||||||||||    |||| |||||||||||||||||| || ||||| ||||    
T  38833080 taattaaggaactaaaaataaaaagaaaagttaaattttgcattgaaaagaacatacttttttaactttcaaaaagtagaatacataattttcaat 38832985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 96 - 165
Target Start/End: Original strand, 31977223 - 31977296
Alignment:
Q  96 tagaatgaaaagtcaaattttgaattaaaaagaacatttttt----actttcaaaaagtagaatgcacaatttc 165  Q
    ||||| |||||||||||||||| |||||||| ||||||||||    ||| | |||||||||||| |||||||||    
T  31977223 tagaaagaaaagtcaaattttgcattaaaaaaaacatttttttttaactattaaaaagtagaatacacaatttc 31977296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 31064596 - 31064662
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaaatgttcaggatgcactcgttaacattt 233  Q
    |||||||||| | ||| |||||||||||||||||||||| | ||| | ||| ||||||||||||||||    
T  31064596 caattttcaaaaaaatgtttctttttataattccttaactagtgtccggga-gcactcgttaacattt 31064662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 167 - 209
Target Start/End: Original strand, 51490237 - 51490279
Alignment:
Q  167 aattttcaagataatatttctttttataattccttaacaaatg 209  Q
    ||||||||||| |||||||  ||||||||||||||||||||||    
T  51490237 aattttcaagagaatattttcttttataattccttaacaaatg 51490279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 53653224 - 53653143
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca-ttttttactttcaaaaagtagaatgcacaatttccaat 169  Q
    |||||| ||||| |||||||||| ||||  ||| ||||||||| |||||||  || |||||||||||| |||||||| ||||    
T  53653224 ctaaaagtagaaagaaaagtcaatttttatattgaaaagaacacttttttaactttaaaaagtagaatacacaattttcaat 53653143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 49980353 - 49980313
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaa 206  Q
    |||||| |||||||||||||| ||| |||||||||||||||    
T  49980353 caatttccaagataatatttcctttcataattccttaacaa 49980313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 31330631 - 31330554
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaattt 164  Q
    |||||||||||| |||||||||| ||||  |||||||||||||  ||||| |||||||||||||||||| ||||||||    
T  31330631 ctaaaaatagaaagaaaagtcaagttttatattaaaaagaacacttttttaactttcaaaaagtagaatacacaattt 31330554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 104 - 164
Target Start/End: Original strand, 9245959 - 9246021
Alignment:
Q  104 aaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaattt 164  Q
    |||||||| ||||| ||| |||| |||| |||||  |||||||||||||||||||||||||||    
T  9245959 aaagtcaatttttgtattgaaaataacacttttttaactttcaaaaagtagaatgcacaattt 9246021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 89 - 204
Target Start/End: Original strand, 45716450 - 45716560
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttccaattttcaagataatatttc 186  Q
    |||||| ||||| |||||||||||||||| ||| |||| ||||  ||||| |||||||||||||||||| || ||||||       ||||| ||||||||    
T  45716450 ctaaaagtagaaagaaaagtcaaattttgtattgaaaataacacttttttaactttcaaaaagtagaatccataatttc-------caagacaatatttc 45716542  T
Q  187 tttttataattccttaac 204  Q
     |||||||||||||||||    
T  45716543 cttttataattccttaac 45716560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 8329762 - 8329681
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacat--tttttactttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||| ||||| |||| ||||| |||||||||||||   |||| |||||||||||||||||| || |||||||||    
T  8329762 ctaaaagtagaaagaaaattcaagttttgcattaaaaagaacaccattttaactttcaaaaagtagaatacataatttccaa 8329681  T

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Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 81 - 154
Target Start/End: Original strand, 20493608 - 20493682
Alignment:
Q  81 ttaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca-ttttttactttcaaaaagtagaa 154  Q
    |||| ||||||||| ||||| | |||||||||||||| ||||||| ||||| ||| | |||||||||||||||||    
T  20493608 ttaaagtgctaaaagtagaaaggaaagtcaaattttgtattaaaatgaacactttctaactttcaaaaagtagaa 20493682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 89 - 165
Target Start/End: Original strand, 6599346 - 6599425
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt---actttcaaaaagtagaatgcacaatttc 165  Q
    |||||| ||||| |||||||||| ||||| ||| ||||| |||||||||   |||||||||||||| ||| |||||||||    
T  6599346 ctaaaagtagaaagaaaagtcaagttttgcattgaaaagtacattttttttaactttcaaaaagtataatacacaatttc 6599425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 168
Target Start/End: Complemental strand, 25749799 - 25749700
Alignment:
Q  71 agagcattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| || ||||||  ||| || ||||| ||||||| || ||||| ||| ||||||||| |||||  ||||||||||| |||||| ||||||||||||    
T  25749799 agagcactagttaaggaactacaagtagaaagaaaagtaaagttttgcattgaaaagaacacttttttaactttcaaaaaatagaatacacaatttccaa 25749700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 166 - 204
Target Start/End: Original strand, 29108801 - 29108839
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaac 204  Q
    |||||||||||| |||||||| |||||||||||||||||    
T  29108801 caattttcaagaaaatatttccttttataattccttaac 29108839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 33635803 - 33635722
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||||||||| |||||||||| ||||  ||  ||||||| | |||||  ||||| |||||||||||| ||||||||||||    
T  33635803 ctaaaaatagaaagaaaagtcaagttttatatcgaaaagaatacttttttaacttttaaaaagtagaatacacaatttccaa 33635722  T

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Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 48743576 - 48743494
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaat 169  Q
    |||||| ||||| ||||| |||||||||| |||||||| ||||||||||  | |||||||||||  |||||||||||||||||    
T  48743576 ctaaaagtagaaagaaaaatcaaattttgcattaaaaacaacatttttttaattttcaaaaagtgaaatgcacaatttccaat 48743494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 89 - 204
Target Start/End: Complemental strand, 36860403 - 36860295
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacattttttactttcaaaaagtagaatgcacaatttccaattttcaagataatatttctt 188  Q
    |||||| |||||  |||||| || ||||| ||| |||| ||| ||||||| |||||||||||||||| |||||||||||||       | ||||||||||    
T  36860403 ctaaaagtagaaataaaagttaagttttgcattgaaaataactttttttaatttcaaaaagtagaatacacaatttccaat-------acaatatttctt 36860311  T
Q  189 tttataattccttaac 204  Q
    ||||||||| ||||||    
T  36860310 tttataatttcttaac 36860295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Original strand, 36619881 - 36619963
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaat 169  Q
    |||||||||||| |||||||||||||||  ||| ||||||||| | |||  ||||| |||||||| ||| |||||||||||||    
T  36619881 ctaaaaatagaaagaaaagtcaaattttacattgaaaagaacactatttaaacttttaaaaagtaaaatacacaatttccaat 36619963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 166 - 206
Target Start/End: Complemental strand, 26194578 - 26194538
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaa 206  Q
    |||||| |||||||||||||| |||||||||||||||||||    
T  26194578 caatttacaagataatatttcattttataattccttaacaa 26194538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 164
Target Start/End: Original strand, 21139269 - 21139346
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaattt 164  Q
    |||||||||||| ||||||| || ||||| ||||| | ||||| |||||  |||||||||||||||||| || |||||    
T  21139269 ctaaaaatagaaagaaaagttaagttttgtattaagatgaacactttttcaactttcaaaaagtagaatacataattt 21139346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 210
Target Start/End: Original strand, 47742744 - 47742860
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaattttcaagataatatttc 186  Q
    |||||| ||||| |||| ||||||||||  ||| ||||||||| |||||  ||||| |||| ||| ||| ||||| ||||||       |||||||||||    
T  47742744 ctaaaagtagaaagaaatgtcaaattttatattgaaaagaacacttttttaacttttaaaatgtataatacacaaattccaa-------gataatatttc 47742836  T
Q  187 tttttataattccttaacaaatgt 210  Q
     ||||||||||||||||| |||||    
T  47742837 cttttataattccttaaccaatgt 47742860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 90 - 168
Target Start/End: Original strand, 12763380 - 12763460
Alignment:
Q  90 taaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    ||||| ||||| ||||| |||||||||| ||| |||| |||| ||| |  |||||||||||||||||| |||| |||||||    
T  12763380 taaaagtagaaagaaaaatcaaattttgcattgaaaataacactttcttaactttcaaaaagtagaatacacagtttccaa 12763460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 103 - 168
Target Start/End: Original strand, 53374961 - 53375028
Alignment:
Q  103 aaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| |||||||| ||| |||| |||| |||||  ||||| |||||||||||| ||||||||||||    
T  53374961 aaaagtaaaattttgcatttaaaaaaacactttttcaacttttaaaaagtagaatacacaatttccaa 53375028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 89 - 168
Target Start/End: Complemental strand, 26127372 - 26127291
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||| |||||||||||||||  ||| |||| |||| |||||  |||||||||||||||||| ||||||||||||    
T  26127372 ctaaaagtagaaagaaaagtcaaattttacattgaaaataacacttttttaactttcaaaaagtagaatacacaatttccaa 26127291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 74 - 168
Target Start/End: Complemental strand, 35539081 - 35538985
Alignment:
Q  74 gcattaattaaggtgctaaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| ||||| ||||||||| | ||||||||||||||||||  |||||||||||||  ||||| ||||| ||||| || ||| |||| |||||||    
T  35539081 gcattagttaagatgctaaaaacataatgaaaagtcaaattttacattaaaaagaacacttttttaacttttaaaaaataaaatacacagtttccaa 35538985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 103 - 169
Target Start/End: Complemental strand, 15822764 - 15822696
Alignment:
Q  103 aaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaat 169  Q
    |||| |||||||||| ||| |||| ||||||||||  ||||||||||| ||||||||||||||| ||||    
T  15822764 aaaaatcaaattttgcattcaaaacaacatttttttaactttcaaaaaatagaatgcacaattttcaat 15822696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 102 - 164
Target Start/End: Original strand, 1411562 - 1411625
Alignment:
Q  102 gaaaagtcaaattttgaattaaaaagaaca-ttttttactttcaaaaagtagaatgcacaattt 164  Q
    ||||||||||||||||| |||||||  ||| ||||| ||| |||||||||||||| ||||||||    
T  1411562 gaaaagtcaaattttgatttaaaaactacactttttaactatcaaaaagtagaatacacaattt 1411625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 209
Target Start/End: Original strand, 43638416 - 43638459
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaaatg 209  Q
    |||||||||||| |||||||| ||||||||||||||||| ||||    
T  43638416 caattttcaagacaatatttccttttataattccttaaccaatg 43638459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 89 - 164
Target Start/End: Complemental strand, 14171926 - 14171849
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaattt 164  Q
    |||||| ||||| ||||||| || ||||| ||| |||| ||||||||||  |||||||||||||| ||| ||||||||    
T  14171926 ctaaaagtagaaagaaaagtgaagttttgcattgaaaaaaacatttttttaactttcaaaaagtaaaatacacaattt 14171849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0257 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0257
Description:

Target: scaffold0257; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 104 - 164
Target Start/End: Complemental strand, 18922 - 18858
Alignment:
Q  104 aaagtcaaattttgaattaaaaagaacatttttt----actttcaaaaagtagaatgcacaattt 164  Q
    |||||||||||||| |||||||||||||||||||    |||||||||||||||||| || |||||    
T  18922 aaagtcaaattttgcattaaaaagaacattttttttcaactttcaaaaagtagaatacataattt 18858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0191 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: scaffold0191
Description:

Target: scaffold0191; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 89 - 169
Target Start/End: Complemental strand, 4653 - 4571
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacattt--tttactttcaaaaagtagaatgcacaatttccaat 169  Q
    |||||| ||||| |||||||||| || || ||||||||||||||||  || ||||||||||||| |||| |||||||| ||||    
T  4653 ctaaaagtagaaagaaaagtcaagttctgtattaaaaagaacattttattaactttcaaaaagtggaatacacaattttcaat 4571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 6221049 - 6221129
Alignment:
Q  89 ctaaaaatagaatgaaaagtcaaattttgaattaaaaagaacatttttta-ctttcaaaaagtagaatgcacaatttccaa 168  Q
    |||||| | ||| |||||||||||||||  ||| ||||||| | |||||| |||||||||||||||||  |||||||||||    
T  6221049 ctaaaagtggaaagaaaagtcaaattttttattgaaaagaatactttttaactttcaaaaagtagaatatacaatttccaa 6221129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 104 - 239
Target Start/End: Original strand, 30898064 - 30898194
Alignment:
Q  104 aaagtcaaattttgaattaaaaagaacatttttt--actttcaaaaagtagaatgcacaatttccaattttcaagataatatttctttttataattcctt 201  Q
    |||||||| ||||| |||  ||||||||| ||||  ||||||||||||||||||| ||| |||       |||||| |||||||| ||||||||||||||    
T  30898064 aaagtcaagttttgcattggaaagaacatctttttaactttcaaaaagtagaatgtacagttt-------tcaagaaaatatttccttttataattcctt 30898156  T
Q  202 aacaaatgttcaggatgcactcgttaacattttcctta 239  Q
    ||||| || ||  |  ||||| |||||||||| |||||    
T  30898157 aacaagtgctccaggggcacttgttaacatttccctta 30898194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 91 - 168
Target Start/End: Complemental strand, 45879222 - 45879143
Alignment:
Q  91 aaaaatagaatgaaaagtcaaattttgaattaaaaagaaca--ttttttactttcaaaaagtagaatgcacaatttccaa 168  Q
    |||| ||||| |||||||||| ||||| ||| |||| ||||  |||||  ||||||||||||||||| ||||||||||||    
T  45879222 aaaagtagaaagaaaagtcaagttttgtattgaaaaaaacacatttttacctttcaaaaagtagaatacacaatttccaa 45879143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 34224344 - 34224411
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaaatgttcaggatgcactcgttaacattt 233  Q
    |||||||||||| |||| |||  |||||||||||||||||||||| | ||  ||||| ||||||||||    
T  34224344 caattttcaagagaataattccatttataattccttaacaaatgtcccgggagcacttgttaacattt 34224411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 166 - 206
Target Start/End: Original strand, 24495339 - 24495379
Alignment:
Q  166 caattttcaagataatatttctttttataattccttaacaa 206  Q
    ||||||||||||||||||||  ||||||||||| |||||||    
T  24495339 caattttcaagataatattttcttttataattctttaacaa 24495379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 167 - 204
Target Start/End: Original strand, 140335 - 140372
Alignment:
Q  167 aattttcaagataatatttctttttataattccttaac 204  Q
    |||||||||||||| ||||| |||||||||||||||||    
T  140335 aattttcaagataaaatttcattttataattccttaac 140372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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