View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17608_high_5 (Length: 342)

Name: NF17608_high_5
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17608_high_5
NF17608_high_5
[»] chr6 (1 HSPs)
chr6 (18-306)||(16872052-16872338)
[»] chr4 (2 HSPs)
chr4 (113-250)||(36286373-36286510)
chr4 (183-241)||(40823616-40823674)
[»] chr7 (6 HSPs)
chr7 (182-235)||(19939357-19939410)
chr7 (182-235)||(19970496-19970549)
chr7 (183-251)||(20231783-20231851)
chr7 (183-242)||(20243855-20243914)
chr7 (186-241)||(20005149-20005204)
chr7 (183-242)||(20264242-20264301)
[»] chr3 (1 HSPs)
chr3 (182-227)||(1091486-1091531)


Alignment Details
Target: chr6 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 18 - 306
Target Start/End: Complemental strand, 16872338 - 16872052
Alignment:
Q  18 gaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcattacgtttga 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872338 gaaggatatatgacaagaattgttggaacatagaaagtatacacacctttctctttcaccaaaaagattgtaaaatatacgaagagctcattacgtttga 16872239  T
Q  118 gctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactactagagat 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  16872238 gctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagcttcggagtattactactagagat 16872139  T
Q  218 tgttagtggaagaagaaacacaagtatttttgacattaattataggatttgtaagcccctcatcatagctccttgttttattattattt 306  Q
    |||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16872138 tgttagtggaagaagaa--acaagtatttttgacattaattataggatttgtaagcccctcatcatagctccttgttttattattattt 16872052  T

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Target: chr4 (Bit Score: 82; Significance: 1e-38; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 113 - 250
Target Start/End: Original strand, 36286373 - 36286510
Alignment:
Q  113 tttgagctttaaatgtagtcactgcatatctcccgaatacgcaatgcaagaaattgtttcttagctatatgatgtctttagctttggagtattactacta 212  Q
    ||||| ||||||||| |||| || ||||||||| |||||||||||||||| |||||||||  ||| || |||||||||||||||||||||||||||||||    
T  36286373 tttgacctttaaatgcagtcgctacatatctccagaatacgcaatgcaaggaattgtttccgagcaatgtgatgtctttagctttggagtattactacta 36286472  T
Q  213 gagattgttagtggaagaagaaacacaagtatttttga 250  Q
    |||||||||  ||| ||||||||||||||| |||||||    
T  36286473 gagattgtttttggtagaagaaacacaagtctttttga 36286510  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 40823674 - 40823616
Alignment:
Q  183 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 241  Q
    ||||||||||||||||| || ||  ||||||||||| ||||||| ||||||||| ||||    
T  40823674 gatgtctttagctttggtgttttgatactagagattattagtgggagaagaaactcaag 40823616  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 19939357 - 19939410
Alignment:
Q  182 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 235  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19939357 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19939410  T

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Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 182 - 235
Target Start/End: Original strand, 19970496 - 19970549
Alignment:
Q  182 tgatgtctttagctttggagtattactactagagattgttagtggaagaagaaa 235  Q
    ||||||||||||||||||||| ||||| || |||||| ||||||||||||||||    
T  19970496 tgatgtctttagctttggagttttacttcttgagattattagtggaagaagaaa 19970549  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 183 - 251
Target Start/End: Original strand, 20231783 - 20231851
Alignment:
Q  183 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagtatttttgac 251  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| ||||| ||| ||||    
T  20231783 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagtttttatgac 20231851  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 20243855 - 20243914
Alignment:
Q  183 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt 242  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  |||||||||||| |||||    
T  20243855 gatgtttttagctttggtgtattgctactagagattgttatcggaagaagaaactcaagt 20243914  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 186 - 241
Target Start/End: Complemental strand, 20005204 - 20005149
Alignment:
Q  186 gtctttagctttggagtattactactagagattgttagtggaagaagaaacacaag 241  Q
    ||||| ||||||||||| || ||| |||||||||||||||||||| ||||| ||||    
T  20005204 gtcttcagctttggagttttgctaatagagattgttagtggaagacgaaactcaag 20005149  T

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Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 183 - 242
Target Start/End: Original strand, 20264242 - 20264301
Alignment:
Q  183 gatgtctttagctttggagtattactactagagattgttagtggaagaagaaacacaagt 242  Q
    ||||| ||||||||||| ||||| ||||||||||||||||  || ||||||||| |||||    
T  20264242 gatgtttttagctttggtgtattgctactagagattgttatcgggagaagaaactcaagt 20264301  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 182 - 227
Target Start/End: Original strand, 1091486 - 1091531
Alignment:
Q  182 tgatgtctttagctttggagtattactactagagattgttagtgga 227  Q
    |||||| ||||||||||| |||||| ||||||||||||| ||||||    
T  1091486 tgatgtatttagctttggtgtattattactagagattgtaagtgga 1091531  T

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