View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17608_high_6 (Length: 325)

Name: NF17608_high_6
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17608_high_6
NF17608_high_6
[»] chr3 (1 HSPs)
chr3 (21-315)||(38227772-38228066)


Alignment Details
Target: chr3 (Bit Score: 291; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 21 - 315
Target Start/End: Original strand, 38227772 - 38228066
Alignment:
Q  21 tcaggaatcattcccatctccccatcagaatgctttgtaagcatttttatcaaaacaaggacaagttcctccatctgagaagttgatacagctccagggc 120  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38227772 tcaggaatcattcccatctccccatcagaatgctttgtaagcatttttatcaaaacaagcacaagttcctccatctgagaagttgatacagctccagggc 38227871  T
Q  121 actcagaaatgcattcataaatgagcttcagtgtctcgtattgaactggatgaaaaggaacttcagtcacataacgcagtacaggaaccagagttgaaaa 220  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227872 actcagaaatgcattcataaatgagcttcagtgtctcgtattgaactggatgaaaaggaacttcagtcacataacgcagtacaggaaccagagttgaaaa 38227971  T
Q  221 cccaacaaccagcctcggtctaaaagcttcctctgaattcgataatagatcaagtacctgaaggcacatcttgactgccggatccttgttctctg 315  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38227972 cccaacaaccagcctcggtctaaaagcttcctctgaattcgataatagatcaagtacctgaaggcacatcttgactgccggatccttgttctctg 38228066  T

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