View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_high_7 (Length: 259)
Name: NF17608_high_7
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_high_7 |
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Alignment Details
Target: chr2 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 255
Target Start/End: Complemental strand, 37264556 - 37264302
Alignment:
| Q |
1 |
cttggtagaactatactttgtgcttgaagaaatttttggattggaaaatttactgcataagcaaatatttgtgggataagtccatacacaaaaagtgctg |
100 |
Q |
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| T |
37264556 |
cttggtagaactatactttgtgcttgaagaaatttttggattgggaaatttactgcataagcaaatatttgtgggataagtccatacacaaaaagtgctg |
37264457 |
T |
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| Q |
101 |
ctgcagaagctattcttggtgattgtccaatgaatactaggattggttcacttaatacgtaaataattgtgaggaaaaaaccggttattgttagaagaat |
200 |
Q |
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| T |
37264456 |
ctgcagaagctattcttggtgattgtccaatgaatactaggattggttcacttaatacgtaaataattgtgaggaaaaaaccggttattgttagaagaat |
37264357 |
T |
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| Q |
201 |
tgttgatctttgtaaatatgttcctagcatgtcatatttttctgctccctatgct |
255 |
Q |
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| T |
37264356 |
tgttgatctttgtaaatatgttcctagcatgccatatttttctgctccatatgct |
37264302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 10 - 248
Target Start/End: Original strand, 16945298 - 16945536
Alignment:
| Q |
10 |
actatactttgtgcttgaagaaatttttggattggaaaatttactgcataagcaaatatttgtgggataagtccatacacaaaaagtgctgctgcagaag |
109 |
Q |
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| T |
16945298 |
actatgctttgtgcttgaagaaatttttggattggaaagtttatagcataggcaaatatttgtgggattaaaccaaagacaaaaagggatgctgctgatg |
16945397 |
T |
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| Q |
110 |
ctattcttggtgattgtccaatgaatactaggattggttcacttaatacgtaaataattgtgaggaaaaaaccggttattgttagaagaattgttgatct |
209 |
Q |
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| T |
16945398 |
caatttttggtgattctcctagaaatattaaaattggttcggagaatatgtatattattgttaaaattaaaccggctattgtgagaagcactgttgatct |
16945497 |
T |
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| Q |
210 |
ttgtaaatatgttcctagcatgtcatatttttctgctcc |
248 |
Q |
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| T |
16945498 |
ttgcaaatatatgcctaacatttcatatttttttgctcc |
16945536 |
T |
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