View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17608_high_8 (Length: 257)

Name: NF17608_high_8
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17608_high_8
NF17608_high_8
[»] chr4 (3 HSPs)
chr4 (51-238)||(45868040-45868227)
chr4 (166-238)||(45982778-45982850)
chr4 (51-89)||(45982929-45982967)
[»] chr5 (1 HSPs)
chr5 (164-235)||(40892839-40892910)


Alignment Details
Target: chr4 (Bit Score: 180; Significance: 3e-97; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 51 - 238
Target Start/End: Original strand, 45868040 - 45868227
Alignment:
Q  51 atttcgtcctcgatactttcgatttctacttccagtaacccctttcgcttcttcttcttctttcaaattttaattgctgttataccaaattgattaaatt 150  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  45868040 atttcgtcctcgatactttcgatttctacttccagtaacccctttcgcttcttcttcttctttcaaattttaattgttgttataccaaattgattaaatt 45868139  T
Q  151 taaattaaatctcgttgtttcagggaagcatccaccaagctcaatgccgaagctactcaaagatcccaacatctcacacaggtttcat 238  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45868140 taaattaaatctcgttgtttcagggaagcatccaccaagctcaatgctgaagctactcaaagatcccaacatctcacacaggtttcat 45868227  T

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Target: chr4; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 45982850 - 45982778
Alignment:
Q  166 tgtttcagggaagcatccaccaagctcaatgccgaagctactcaaagatcccaacatctcacacaggtttcat 238  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  45982850 tgtttcagggaagcatccaccaagctcaatgctgaagctactcaaagatcccaacatctcacacaggtttcat 45982778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 51 - 89
Target Start/End: Complemental strand, 45982967 - 45982929
Alignment:
Q  51 atttcgtcctcgatactttcgatttctacttccagtaac 89  Q
    ||||| || ||||||||||||||||||||||||||||||    
T  45982967 atttcttcatcgatactttcgatttctacttccagtaac 45982929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 164 - 235
Target Start/End: Original strand, 40892839 - 40892910
Alignment:
Q  164 gttgtttcagggaagcatccaccaagctcaatgccgaagctactcaaagatcccaacatctcacacaggttt 235  Q
    ||||||||||||||||| ||||||||| |||||| ||| |||| ||||||||||||||||| | ||||||||    
T  40892839 gttgtttcagggaagcacccaccaagcccaatgctgaacctacccaaagatcccaacatcttatacaggttt 40892910  T

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