View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17608_high_9 (Length: 237)
Name: NF17608_high_9
Description: NF17608
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17608_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 37264636 - 37264857
Alignment:
| Q |
1 |
ttgggagcttcattggttttgagtttttcttggtgggttattgttgtggcacaatttatttatattttgaagagtgagaagtgtaagaggacttggaatg |
100 |
Q |
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| T |
37264636 |
ttgggagcttcattggttttgagtttttcttggtgggttattgttgtggcacaatttatttatattttgaagagtgagaagtgtaagaggacttggaatg |
37264735 |
T |
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| Q |
101 |
ggtttgcttgggaggcgttttcggggttgccggagttttttaaattgtcggccgcgtcggccgttatgctttgtttggagtcttggtattttcagatttt |
200 |
Q |
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| T |
37264736 |
ggtttacttgggaggcattttcggggttgccggagttttttaaattgtcggccgcgtcggcggttatgctttgtttggagtcttggtattttcagatttt |
37264835 |
T |
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| Q |
201 |
ggttttgcttgctggacttctt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
37264836 |
ggttttgcttgctggacttctt |
37264857 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 10 - 50
Target Start/End: Complemental strand, 8004578 - 8004538
Alignment:
| Q |
10 |
tcattggttttgagtttttcttggtgggttattgttgtggc |
50 |
Q |
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| T |
8004578 |
tcattggttttgagtttttgttggtgggttattgtggtggc |
8004538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 7 - 215
Target Start/End: Complemental strand, 16945203 - 16944995
Alignment:
| Q |
7 |
gcttcattggttttgagtttttcttggtgggttattgttgtggcacaatttatttatattttgaagagtgagaagtgtaagaggacttggaatgggtttg |
106 |
Q |
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| T |
16945203 |
gcttcattggttttgagtatttcttggtggataattgtgattgcacaatttgtttatattgtgaagagtgagaaatgtaagcatacttggaaagggttta |
16945104 |
T |
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| Q |
107 |
cttgggaggcgttttcggggttgccggagttttttaaattgtcggccgcgtcggccgttatgctttgtttggagtcttggtattttcagattttggtttt |
206 |
Q |
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|| | || ||||| |||||||| ||||||||||||||||| || || || || || ||| | ||||| ||| ||||||| ||||| || |||||||| |
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| T |
16945103 |
gttttcaagcattttcagggttgccagagttttttaaattgtcagctgcttcagctgtgatgttgtgtttagagacttggtactttcaaatcttggtttt |
16945004 |
T |
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| Q |
207 |
gcttgctgg |
215 |
Q |
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||||||||| |
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| T |
16945003 |
gcttgctgg |
16944995 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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